Phyg017740.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- zfh1
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:18827881-18830220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5e-07 1.9e-05 26.4 0.2 1 23 86 108 86 108 0.97 2 19 0.00013 0.016 17.2 1.6 1 23 114 136 114 136 0.97 3 19 9.2e-07 0.00011 24.0 3.2 1 23 142 164 142 164 0.98 4 19 3e-05 0.0036 19.2 0.6 1 23 170 192 170 192 0.98 5 19 0.0057 0.7 12.1 0.1 1 23 198 220 198 220 0.98 6 19 0.00031 0.038 16.0 1.5 1 23 226 248 226 248 0.97 7 19 0.00021 0.026 16.5 1.7 1 23 254 276 254 276 0.96 8 19 2.5e-06 0.00031 22.6 1.7 1 23 282 304 282 304 0.98 9 19 9.7e-05 0.012 17.6 2.1 1 23 310 332 310 332 0.96 10 19 8.6e-06 0.0011 20.9 1.0 1 23 338 360 338 360 0.97 11 19 6.5e-06 0.0008 21.3 0.6 1 23 366 388 366 388 0.98 12 19 0.00035 0.043 15.8 0.3 3 23 547 567 545 567 0.95 13 19 0.025 3.1 10.0 0.6 1 13 573 585 573 586 0.89 14 19 6.3e-06 0.00077 21.4 0.9 1 23 597 619 597 619 0.95 15 19 7.2e-06 0.00088 21.2 1.4 1 23 625 647 625 647 0.98 16 19 1.5e-05 0.0018 20.2 1.4 1 23 653 675 653 675 0.98 17 19 1.2e-05 0.0015 20.4 0.3 1 23 681 703 681 703 0.96 18 19 0.00032 0.039 16.0 4.3 1 23 709 731 709 731 0.98 19 19 8.6e-05 0.011 17.8 2.6 1 23 738 760 738 760 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAACTATGGATAAAGTCTGAAATCGACGATGAATCGTCATCTCGTCCTTTCGTGAAGTTGTACATTAAATCTGAGGATAAAGCAGACGAATCTAAAAACGAAATTGACATCGTAGATTGTGAGAACGTTGAAATTAAATCGGAAAAAAATGCCGATGACTTAAACATCGATTTCTCATGGAATGGAATGTCAGTAAATTCGACTTCGGATAAAAAGGTTAAGTCTACCACTCGAATCCAAAAACGTGAGTTCATTTGCAATGAATGTGGAAAGACGTTCAGCCAAAAAGGGAATCTGGCGTCTCACTTGATCATACACACTGGAGCAAAACCGTTTGCCTGCGACATTTGCGGCACAAGATTCGCTAGACAATGTTTACTAGTATATCACAAACGCATGCACACTGGCGCAAAACCTTTCCCTTGCGAAGACTGTGATATGAAGTTCAGGCAAAAAGATCATCTAATTAAACACCGAAGAAGGCACACCGACGAAAAGCCGTTTTCCTGCGATATGTGTGAAGCCAGATATGCTAGAAAAGAGTATCTCCAAGTTCATCAGCGAACTCACACAGGTGAGAGGCCGTTTGTCTGCGATGAATGTGGCAGTGGTTTTCTTTCTAACGCGGGTCTGAAGAGACACTTGATTTCACACACCGGTGAAAAGCGATATTCGTGCGATGTTTGTGGTATGAAATTTACGCAAAAAACTACTATGACATTACACAAAGAGAGGCACACCGAAAAGAAGCCATTCGTTTGCGATGTGTGTGACATGAAGTTCCCTCATAAAAGCTACTTGAGATTACACAAAGTGTCGCATACAACTGAGAAGCCTTTTGTTTGTGATAAATGCGGAAAGACTTTTGccagaaaaaatcaaatgacgTCGCACTACCTGACACACActggcaaaaaacattttccttgcaATGAATGTGACATGAGATTCACGAGACCATATCTTCTACACCAACACAAACTACAACACAGCGGTGAGAAGCCGTTCCCTTGCGATGAATGCGAAATGAGATTCACTCAGAAGTCGTCGTTAAAAGCACACAAATTGAAGCACAGCGGCGAGAAGCCGTTTTCGTGCGATGAATGTGGGAACAGCTTCAGATCGAACGCTTGGCTAAAGCAACACAAAAGAATACACCGCGGAAAACCGTTGAAATCACAAAAGAAAATGGAACCTCTGGAAATTAATCGCGAAATTTCATTTGACAGCGAAGGGAGTCGCGTTAATTGTAACGGATTTGAGGACAATTTGAACGTAGAAACGGAAGTAGAAATATTTACAGTTGTTGAGAAACCAATCGTTGAAGACACAATCAAAATTCGGTCACAATCGCTTATCGGAGATCAACCATGTTCTTCCGTCAATGACGCAACGTTTGTACCGTACTCTTCTGACGATGACGCAAAATTTGTATCAAGTCCACTCATCGATGAGCCTAAAGTCGAAATCATTCAAGACACAGACTGCAATATAGAAATGTCATACAATGGAAATAGCGACCAagaaagtgaaaataattcGCACACACAAACGCTTACTATGCAATCAGCCTCTTGTGACAAAAAACTGGAGTACACACGAAAAAGTGGTAGAAAAAGTCTGAATCTCGCTTGCGACGAATGtggaaaaaagtttccaaacTCTCGAAGATTGGCGCAACACAATAGATTGCACTCGGGTGAAAAGCCGTTCGCCTGCAACGACTGTGGAAAAGCGTTCCGTTACCAGCATGTCTGTGCACCGAAAGGTGGTGAAGAGTTATTCATTTGTGATGAATGTGGAAAGCAATTCAAGTCAAATTCCAATCTCTACagtcacaaaattttacatgcTGGAAAAAGAGCGTTTGAGTGCGATGAATGTGGAATGCGATTCACACAGAAGGCACATTTACAAGGGCACAAACTAACACATACCGGCGAGAAACCGTTCTCTTGCGATGAGTGTGGGGCGCGATTTACAACGAAATCGAGCGTACGATATCACCAACGACAACACACAGGCGAAAGACCGTTCGCATGCAATTTGTGTGGAATGAGATTCACCGAGAAAAGTGCATTGAATCGCCACCAGGTGGTGCATACCGGAGAGAGACAATTCGTTTGCGATGAATGTGGGAAGAAATATAAAACAAAGCGTTGTTTGATGTTGCACAAATTGAAGCACACCGGCGACGAGAAGCGATTTTCATGTGATATATGTGACAGGAAATTCACAAATAAGGTTTACACGAAAAAACATCAGTTATctcacttttcaaaaaaacaaagaaaaccgCACACCCCGAAAGTCAAACTACAAATTGGACGTTAA
- Protein Sequence
- MEELWIKSEIDDESSSRPFVKLYIKSEDKADESKNEIDIVDCENVEIKSEKNADDLNIDFSWNGMSVNSTSDKKVKSTTRIQKREFICNECGKTFSQKGNLASHLIIHTGAKPFACDICGTRFARQCLLVYHKRMHTGAKPFPCEDCDMKFRQKDHLIKHRRRHTDEKPFSCDMCEARYARKEYLQVHQRTHTGERPFVCDECGSGFLSNAGLKRHLISHTGEKRYSCDVCGMKFTQKTTMTLHKERHTEKKPFVCDVCDMKFPHKSYLRLHKVSHTTEKPFVCDKCGKTFARKNQMTSHYLTHTGKKHFPCNECDMRFTRPYLLHQHKLQHSGEKPFPCDECEMRFTQKSSLKAHKLKHSGEKPFSCDECGNSFRSNAWLKQHKRIHRGKPLKSQKKMEPLEINREISFDSEGSRVNCNGFEDNLNVETEVEIFTVVEKPIVEDTIKIRSQSLIGDQPCSSVNDATFVPYSSDDDAKFVSSPLIDEPKVEIIQDTDCNIEMSYNGNSDQESENNSHTQTLTMQSASCDKKLEYTRKSGRKSLNLACDECGKKFPNSRRLAQHNRLHSGEKPFACNDCGKAFRYQHVCAPKGGEELFICDECGKQFKSNSNLYSHKILHAGKRAFECDECGMRFTQKAHLQGHKLTHTGEKPFSCDECGARFTTKSSVRYHQRQHTGERPFACNLCGMRFTEKSALNRHQVVHTGERQFVCDECGKKYKTKRCLMLHKLKHTGDEKRFSCDICDRKFTNKVYTKKHQLSHFSKKQRKPHTPKVKLQIGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -