Phyg004245.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:49028945-49031572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.7e-06 0.00021 23.1 0.4 1 23 76 98 76 98 0.98 2 21 0.00085 0.1 14.7 1.8 1 23 104 126 104 126 0.97 3 21 6.4e-05 0.0079 18.2 0.4 1 23 132 154 132 154 0.98 4 21 0.053 6.4 9.0 0.1 1 23 160 182 160 182 0.94 5 21 0.0007 0.085 14.9 1.1 1 23 188 210 188 210 0.96 6 21 0.013 1.5 11.0 0.1 1 23 216 238 216 238 0.95 7 21 0.00025 0.031 16.3 0.9 1 23 244 266 244 266 0.98 8 21 0.0011 0.13 14.3 4.6 1 23 272 294 272 294 0.96 9 21 0.00036 0.044 15.8 0.8 1 23 300 322 300 322 0.95 10 21 1.6e-07 1.9e-05 26.4 1.7 1 23 328 350 328 350 0.98 11 21 1.3e-07 1.6e-05 26.7 1.8 1 23 524 546 524 546 0.98 12 21 7.5e-07 9.2e-05 24.3 1.3 1 23 552 574 552 574 0.96 13 21 3.8e-07 4.6e-05 25.2 1.9 1 23 580 602 580 602 0.98 14 21 2.1e-05 0.0026 19.7 0.4 1 23 608 630 608 630 0.97 15 21 0.0035 0.43 12.7 0.6 1 23 636 658 636 658 0.97 16 21 2.3e-05 0.0028 19.6 1.2 1 23 664 686 664 686 0.96 17 21 0.00035 0.042 15.9 3.0 1 23 692 714 692 714 0.94 18 21 0.00017 0.021 16.9 0.9 1 23 720 742 720 742 0.98 19 21 0.0038 0.46 12.6 2.8 1 23 748 770 748 770 0.96 20 21 0.0017 0.2 13.7 0.7 1 23 776 798 776 798 0.97 21 21 2.3e-05 0.0028 19.6 1.3 1 23 804 826 804 826 0.97
Sequence Information
- Coding Sequence
- ATGGACGTCGTTTGGATAAAAACCGAAATTGACGACGGCGATATTCGAAATGAAGTTGCTGTGGGAAAAACTGAACCTCAGGTTGACACCGGAGAGCCTAAGGACTTAAACGTTAAGTCGGAAATTGCCGGTGAATACGCCAACTTCGAATGTTCTTCGTCGGGCAGGTCGACGGAAACAAAAAATGAGGAATCAACTTTGAATCACAACACACGAAGTAATAAATTCATTTGTGACGAATGTGGTAAAAGATTCAACGGCAAGGCTTTTCTTGAAAGACACATGCTTACACACAGTGGTAAGAAGCCATTCGCTTGCGACATTTGCGGTATGCAGTTCGCACAAAAATGTTACATCGAACGCCATAAACGATCACACACTGGCGAGAAGCCATTCTCCTGCGATGTATGCGATTCCAAATTTGCGCGGAAAGCGAGTCTCCAAGTTCATGAACGATCGCACACTGGTGAAAGGCCATTTGTCTGCGAAGAATGTGGCAGCTCCTTCCTTTCTAATCAAGGTCTGAAAATGCACCTTGTACTACATACTGGGGAGAGACGCTACAGTTGCGATGAATGTGGAATGaaatttgcattaaaatccACGATGCGGAAACACAAAGGGAGACACAATAAGGAAAAACCATTCATTTGCGATATCTGTGGAATGGGATTTGCCAACGAACGATATGTAAAATTGCACAAAGTGATGCATTCCGAGGAAAAACCCTTTTCGTGTGACGTTTGTGGCATGAGATTTGCCAGGAGAAATCAAGTCACGTCGCACAGCAAAACGCACACCGGCGAAAAACCATTCCCTTGCGATGAATGCGACATGAGATTCACCAAACCGTGCCATTTGAAACAACACAAACTCCAACACAACGGTGAAAAGCCATACGCATGCGATCAATGCGACATGAGATTCACGCTGAAGTCGTCTTTGAAAGCCCACGGTTACAAGCACACCGGCGAGAAACCGTATCCTTGTGATGAGTGCAACAAGAGTTTCAGAACGAAAACTTGGTTGAGACAACACCAAAGATCACATTCGGGCAAATCGGCGAAACCTATTGGTAAACAGGAAATTGCGGAAATCAAATCTGAAACAATCCTCCCCGTGGAATGTAGTGCACGACCAGAGAGCACAGAATGCGTGGAAAATGAACAATTGAGTTCAATAGTTGAAGAAAGTGACGATGGAAGGGAATTCGAAGATAAATTCAATGTTGAAACACAGGAGCAAATGTTCGTCGACGATGAGGAACCATTCGATTGCAATGAAACAGAAATTCATTCACAAATGTTTCTTAGAGACCCATCGCCTTCTACCGACGTCAATCCGATTAAGCTTGAAGAGACAGTAATTGTACAAATCCACAAACAAATAGACAGCATGGAAACTTCAGAGTCGTACATAATTCCAACTAATCAAAATTATGGCGAAGAAACGAACGTACAAATGCTTCTTCCTGAGGAGCTGCCTCCCGTACACACCGAACAGTACGTTCGCGAAAAGTCACCTCAGTACGTTAGCGAAAAGCCACATTTGAAAAAGGTCGACAAGCCGTACTCCTGCGACGACTGTGGAAAGGCGTTCAAGAAAAAGAAGAATCTCTACAAACATATACGTTTgcacaacattgaaaaactattTGTTTGTGATGAATGTGGAAAGTCATTCAAAACAAGTTCTAATCTCTACAGTCACAAGAGTTTGCACACAGGAGAAAAGCCTTTTCCGTGCGATGAATGTGGAATGCGGTTCAAGCGCAAAGCACACTTACAAGAGCATCAACGTTCACACACCGGTGAGAAACCTTTTGCTTGCGACGAATGTGGAGCAACGTTCAGATCTAAGTCGAGCGTTCGTATCCATGAACGAAAGCACACGGGCGAAAGGCCATTTTGTTGTGAATTGTGTGGAATGAGCTTCGCCGAAAGAGGTGCGGTAAGAAATCACAAAATTACGCATACGGGCGAGCGGCCATTTGATTGTGATGAATGTGGCAAAAACTTCGCAACCAAAAAGTATTTGAGGTTGCACAAAATTCGCCACGTTGGTGACAAGCGATTTCCTTGCGATGTTTGCGGAAAAAAGTTCGTCcgaaaatgtgacatgaagaaacACAAGGTGCAACACAATCCAGAGAAACCATTTTCTTGTGACGTTTGTGGAATGAGATTTGCAAGGAAAACTCAAGTCAAATCACACAACATGACGCACAGCGGTGAAAAGCCATTCCCTTGCGACGAATGTGACATGAGATTCACCAAGCTGTGTCTATTAAAGCAACACAAATTACAGCATAGCGGAGAAAAGCCTTATGCTTGTGATGAATGTGAAATGAGATTCACTCTGAAGGCTTCGTTCAAGGCACACAAATTGAAACACACCGGCGAAAAGCCTTTCTCCTGTGATGAATGCGAAAAGAGATTCATAACTAGAGCTCAGCTGAAACAGCATAAATTATCGCACAGCGGGAAATCACTCAAACCGAACAAAAAGCAAACCGCCACCGAATCTATGGTAAAGAAAGAAACAGAAGCCGCAATAATGAGCACCTTATCTGCGTTTGAAGACGTTGCTGATATAATGCTCAGAGACCACAGCTTTGACTCAGGTTGA
- Protein Sequence
- MDVVWIKTEIDDGDIRNEVAVGKTEPQVDTGEPKDLNVKSEIAGEYANFECSSSGRSTETKNEESTLNHNTRSNKFICDECGKRFNGKAFLERHMLTHSGKKPFACDICGMQFAQKCYIERHKRSHTGEKPFSCDVCDSKFARKASLQVHERSHTGERPFVCEECGSSFLSNQGLKMHLVLHTGERRYSCDECGMKFALKSTMRKHKGRHNKEKPFICDICGMGFANERYVKLHKVMHSEEKPFSCDVCGMRFARRNQVTSHSKTHTGEKPFPCDECDMRFTKPCHLKQHKLQHNGEKPYACDQCDMRFTLKSSLKAHGYKHTGEKPYPCDECNKSFRTKTWLRQHQRSHSGKSAKPIGKQEIAEIKSETILPVECSARPESTECVENEQLSSIVEESDDGREFEDKFNVETQEQMFVDDEEPFDCNETEIHSQMFLRDPSPSTDVNPIKLEETVIVQIHKQIDSMETSESYIIPTNQNYGEETNVQMLLPEELPPVHTEQYVREKSPQYVSEKPHLKKVDKPYSCDDCGKAFKKKKNLYKHIRLHNIEKLFVCDECGKSFKTSSNLYSHKSLHTGEKPFPCDECGMRFKRKAHLQEHQRSHTGEKPFACDECGATFRSKSSVRIHERKHTGERPFCCELCGMSFAERGAVRNHKITHTGERPFDCDECGKNFATKKYLRLHKIRHVGDKRFPCDVCGKKFVRKCDMKKHKVQHNPEKPFSCDVCGMRFARKTQVKSHNMTHSGEKPFPCDECDMRFTKLCLLKQHKLQHSGEKPYACDECEMRFTLKASFKAHKLKHTGEKPFSCDECEKRFITRAQLKQHKLSHSGKSLKPNKKQTATESMVKKETEAAIMSTLSAFEDVADIMLRDHSFDSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266145;
- 90% Identity
- iTF_01266145;
- 80% Identity
- -