Phyg026431.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudolycoriella hygida
Gene Symbol
-
Assembly
GCA_029228625.1
Location
CM055404.1:112225777-112236810[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 5e-05 0.0062 18.5 2.7 1 23 92 114 92 114 0.99
2 25 5.7e-05 0.007 18.3 1.3 1 23 120 142 120 142 0.97
3 25 0.045 5.6 9.2 1.7 1 23 148 170 148 170 0.97
4 25 9.9e-07 0.00012 23.9 0.5 1 23 176 198 176 198 0.98
5 25 4.4e-06 0.00054 21.8 1.6 1 23 204 226 204 226 0.98
6 25 0.00019 0.024 16.7 0.9 2 23 229 250 228 250 0.96
7 25 2e-06 0.00025 22.9 1.7 1 23 256 278 256 278 0.98
8 25 8.2e-05 0.01 17.8 0.5 1 23 284 306 284 306 0.97
9 25 7.6e-05 0.0093 18.0 0.9 1 23 410 432 410 432 0.99
10 25 0.0013 0.15 14.1 4.5 1 20 438 457 438 460 0.94
11 25 0.00036 0.044 15.8 0.5 1 23 469 491 469 491 0.97
12 25 4.2e-07 5.1e-05 25.1 0.8 1 23 497 519 497 519 0.98
13 25 4.1e-05 0.0051 18.8 0.2 1 23 525 547 525 547 0.96
14 25 6.8e-05 0.0083 18.1 0.8 2 23 550 571 549 571 0.97
15 25 6.5e-05 0.0079 18.2 2.5 1 23 577 599 577 599 0.98
16 25 0.013 1.5 11.0 0.7 1 23 605 627 605 627 0.97
17 25 0.00011 0.013 17.5 0.2 1 23 633 655 633 655 0.98
18 25 0.00029 0.035 16.1 1.9 1 23 661 683 661 683 0.98
19 25 0.00071 0.087 14.9 4.8 1 23 689 711 689 711 0.98
20 25 7.2e-05 0.0088 18.0 1.7 1 23 717 739 717 739 0.98
21 25 0.0085 1 11.5 2.6 1 23 745 767 745 767 0.98
22 25 5.2e-05 0.0063 18.5 2.3 1 23 895 917 895 917 0.98
23 25 3.2e-05 0.0039 19.1 0.9 1 23 923 945 923 945 0.95
24 25 3e-05 0.0037 19.2 0.8 1 23 951 973 951 973 0.98
25 25 0.21 26 7.1 1.6 1 23 979 1002 979 1002 0.95

Sequence Information

Coding Sequence
ATGGAAGGAATTTGGATAAAAACTGAACCGGTTGATGTGGAGCCTTCGTCTCTTTGCCCTGTGAAATCAGAAGTCGGGATTACCATCGAACACACCGAAGAATCATTTTCCGTAACCCCCAACATCAAATCGGAAGCCACGCTATGTGATTACGATTCTACTATATCCAGCGCGGTGCCGCCAGCAGTAAAATCAAACGTAGTCGTTGCCAAAAAACCTGAAGAAATTCCTCCACAGTATGAAAAATCAGCAGTCAATGGACGAAAGAAAAAGTTCAAGTGCGAAGAATGTGGAAGATATTTCTTTCACAGGGGTAGCCTTGAAATACATACGCGGTCGCACACTGGCGAAAGGCCTTTCGAATGCGCCGAATGTGACAAGAAATTCAAAGATAAGAAAACTCTCGTGAACCATTCACTTCGCCATTCTGGCAAAAAGCCATACGCTTGCGATGAGTGTGGAATGCAATTTGCATGCAAGAGTTACATAAAAATCCATAAGCGTTCACACACCAGCGAACGACCCTTCTCCTGCGACATATGTGGACAAAAATTCTCACAAAAACCGAATCTTTGGACTCATCTTAGACTCCACACAGCCGAGCGACCGTTTGTTTGCAAGGAATGCGGAAAGGCGTTCAATGTCAAGTTTACTCTTCTGAAGCATCAGAAACGCCATTCTTTATCTTGCGAGAAATGCGAATTGACCTTCCCTCAGCATTCCGATTTAAAGTCACACCTTCTGATACATGGATCAAACAAAGCATTCGTTTGCGACGAATGTGGCAAGGCGTTTTCCACAAAGGTTCATCTCATGATGCACAAACAACGCCATTCCGGAAAAAAGACATTCGCTTGCGACATATGTGGGATGCAATTTTACCGCAAAACTGAAGTCAAAACACACATGTTGTCGCATACTAACGAGAAACCTGCCGTCTGCGATGAATGCGatccaCTGCATTCAATGGAAGAAATTTGGATAAAAACTGAACCGATTGATGTGGAACCCTTGTCTCTTTTCTCTGTGAAATCAGAAGTCGGGAATAGCAATGACCAAAGCAGACTATCACAATCTCCAAACATCGAAGGATCGAAAAACTTATACATCAAAGCAGAAGCTTCGCTTTGTGACGACGTTAAAGTAAAGCCTGAACAAAAATCTCCATCGAATAAGAACAAAACATTGGATTCCGGTAAATCGACAGTCAACGGCCGCAAAAGAAAGTTCAAGTGCGAAGAATGTGGAGGACATTTCTTTTCGAGGGGTGGTCTTGAAATACATCAACGGACGCACACTGGTGAAAAGCCTTTCGAATGCGACAAATGTGGAAAGAAATTCGGCCATAAGAAAAGTCTCGCCAATCATCTGTTATGTCACATTGGAAAGAAAAGAGCCAAACCATTCGCTTGCGATGAATGTGGAatgaaattctcagaaaaaagttaCATAAAAGTTCATAAACTTACGCACACCGGTGAACAGCCATTCTCCTGCGGTGAATGTGGacaaaaattttcgcgaaagCCTAATCTTCAGGTACATTTAAGAAAGCACACAGGCGAGCGGCCGTTTATCTGCGACGAATGTGGAAAAGCCTTTGCCCTCAAGTCTACACTTCTGCAGCATCAAACTCTTCATAATTTAACCTGTGATACGTGCAAATTGACCTTCGTGCAGTATTCTGATTTAAAAGCGCACCGACTGACACACGAATCAGATAAACCGTTCATTTGCGACGAATGCGGCCGAACGTTTTTCTTGAAACAAAGTCTCACAAAGCACAAACGTCGCCATTCCGGAAAGAAGTCCTTCGCTTGCGATGTGTGCGGGATGCAATTTTACGAAAAGAGTCGAGTCAAACAACACAAATTGACACATACCAACGAGAAACCTTTCGTTTGCGATGAGTGCGGCGCAAGATTTAAAGAAAAACCGGCTTTAAAGCAACACAAATTGACGCATGGCAACGTGAAACCGTTCTCTTGCGATGAATGCGGTAAGAGATTTCTTCAGAAAAGTCAAGtgaaatcacataaaatgacaCACACCGGCGAAAGGCCATATCCCTGCGACGAATGCGAAATGAGATTCACGAAACCATGTCATCTAAAATCACACAAACAAACGCACACCGGCGAAAGGCCGTATCCTTGCGATGAATGTGACTTAACGTTTACCTCAAGATTTTATCTGAAATCTCACAAATTAAAGCACACCGGTGAGAGACCGTTTCCATGTAATTTTTgtccaaagaaatttttcactAGAACTGGACAGAAGCAACATGAAAGATCGCATATCggaaaatcgaaaaagcaaCAGCTGACAAGTAGTGTCGATAGAAAAACGGAGACAGAGACGGTAGTCGAGAGTGAGGCTAAAATTGAAAGCTTCGGAACAGCGGAGAGCAAAGTTTTTTCCATAGACGAGATGAGCGATAACGGAAATAGTTGCGACGCATTCGAGGAAGGATTTGAAGATTTGAGTGAAGACATACCTGAACCGACACAAATTCCATGCGACAAAATCAAAATGCACGACGAAACAGACGAGGCAATGAATACAAATTCAATTGGTGAATCAATCAATATTTTTGTGGACAAATTGCTAAATGAGAAGTTTAGTGAAAAAATTGATAAGAAAACTTACCCCAGAAAGCAACGTTTCACCGAGAAGCCTTACTCCTGCAAAGAGTGTAATGCGAAATTCGGGTCAGAATCATGGCTCAAACACCATCAACGGTCCCACACCGGCGAAAATCGTTTTGTTTGTGATGAATGTGGCAAGGGATTCAACCGAAAAGATACTTTGGACAAACATAAGTATCTGCACACAGGTGTTAGGCCATTCATTTGCGATGAATGTGGACTAAGATTTGCTCAAAAGAGTCACATTTTAATTCACTTGCGGAGACACTTTAACCTGAAACGCTATTCCTGCGTTCAATGTGCCATCAAGTTTGTCACAATGGGCGCCCTAAAGTCACACAAAAAGCATTTCCATGGTGTGGCGGTGTAA
Protein Sequence
MEGIWIKTEPVDVEPSSLCPVKSEVGITIEHTEESFSVTPNIKSEATLCDYDSTISSAVPPAVKSNVVVAKKPEEIPPQYEKSAVNGRKKKFKCEECGRYFFHRGSLEIHTRSHTGERPFECAECDKKFKDKKTLVNHSLRHSGKKPYACDECGMQFACKSYIKIHKRSHTSERPFSCDICGQKFSQKPNLWTHLRLHTAERPFVCKECGKAFNVKFTLLKHQKRHSLSCEKCELTFPQHSDLKSHLLIHGSNKAFVCDECGKAFSTKVHLMMHKQRHSGKKTFACDICGMQFYRKTEVKTHMLSHTNEKPAVCDECDPLHSMEEIWIKTEPIDVEPLSLFSVKSEVGNSNDQSRLSQSPNIEGSKNLYIKAEASLCDDVKVKPEQKSPSNKNKTLDSGKSTVNGRKRKFKCEECGGHFFSRGGLEIHQRTHTGEKPFECDKCGKKFGHKKSLANHLLCHIGKKRAKPFACDECGMKFSEKSYIKVHKLTHTGEQPFSCGECGQKFSRKPNLQVHLRKHTGERPFICDECGKAFALKSTLLQHQTLHNLTCDTCKLTFVQYSDLKAHRLTHESDKPFICDECGRTFFLKQSLTKHKRRHSGKKSFACDVCGMQFYEKSRVKQHKLTHTNEKPFVCDECGARFKEKPALKQHKLTHGNVKPFSCDECGKRFLQKSQVKSHKMTHTGERPYPCDECEMRFTKPCHLKSHKQTHTGERPYPCDECDLTFTSRFYLKSHKLKHTGERPFPCNFCPKKFFTRTGQKQHERSHIGKSKKQQLTSSVDRKTETETVVESEAKIESFGTAESKVFSIDEMSDNGNSCDAFEEGFEDLSEDIPEPTQIPCDKIKMHDETDEAMNTNSIGESINIFVDKLLNEKFSEKIDKKTYPRKQRFTEKPYSCKECNAKFGSESWLKHHQRSHTGENRFVCDECGKGFNRKDTLDKHKYLHTGVRPFICDECGLRFAQKSHILIHLRRHFNLKRYSCVQCAIKFVTMGALKSHKKHFHGVAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-