Phyg001822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudolycoriella hygida
Gene Symbol
-
Assembly
GCA_029228625.1
Location
CM055403.1:15596357-15598621[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.089 11 8.3 0.3 6 23 2 20 1 20 0.95
2 22 7.1e-08 8.7e-06 27.5 0.5 1 23 25 47 25 47 0.99
3 22 0.0025 0.3 13.2 5.2 1 23 53 75 53 75 0.99
4 22 0.00034 0.041 15.9 0.1 1 23 81 103 81 103 0.98
5 22 3.8e-05 0.0046 18.9 0.0 1 23 109 131 109 131 0.97
6 22 7.7e-05 0.0094 17.9 2.9 1 23 137 159 137 159 0.98
7 22 0.0013 0.16 14.1 0.3 1 23 221 244 221 244 0.98
8 22 0.0052 0.64 12.2 1.3 1 23 251 274 251 274 0.94
9 22 3.7e-05 0.0046 18.9 1.3 1 23 276 298 276 298 0.94
10 22 0.00025 0.031 16.3 1.7 1 23 355 378 355 378 0.97
11 22 6.3e-06 0.00077 21.4 0.9 1 19 391 409 391 410 0.97
12 22 0.052 6.4 9.0 0.2 1 22 421 442 421 444 0.88
13 22 1.9e-07 2.3e-05 26.1 1.1 1 23 465 487 465 487 0.99
14 22 9.2e-05 0.011 17.7 3.7 1 23 493 516 493 516 0.97
15 22 1.9e-05 0.0024 19.8 0.5 1 23 521 543 521 543 0.98
16 22 5.6e-06 0.00069 21.5 0.2 1 23 549 571 549 571 0.99
17 22 0.00019 0.024 16.7 0.4 1 23 577 599 577 599 0.98
18 22 0.0001 0.012 17.6 0.3 1 23 605 627 605 627 0.98
19 22 7.1e-06 0.00086 21.2 1.1 1 23 633 655 633 655 0.98
20 22 6.2e-05 0.0076 18.2 0.3 1 23 661 683 661 683 0.99
21 22 7.8e-06 0.00095 21.1 1.2 3 23 691 711 689 711 0.97
22 22 0.00012 0.015 17.3 1.6 1 23 717 740 717 740 0.97

Sequence Information

Coding Sequence
ATGTGCGGACGTGAGTTTAAGTATCGCAAAGGCCTTATGTATCACAAGGAAACTTACCATGAAGGGAGACGATTCAAGTGTAACGTTTGTGATGCCAGTTTCTCGGACAAATCAGCCTTGACCAAGCACTTACGCATTCACAAAGGTGTGAAGCCATACAGCTGCGATATTTGTTTTACAAACTTCACCCAAAAGACGCACTTAACTTTTCATTTGAGAACACACAGTGGGGAGAAACCTTATCaatgtcaagtttgcgatgctTCATTTGCAGCACCTTGGTCCCTAAAAACTCACAAGGCCACGCACAACGATGTCCGGCCATATCGATGTGTTGAATGTGGTGCTGGCTTTAAAACTCCGGGTGGTTTGAGGAGTCATATGGTCATCCATTCCGACAAAAGACCGCACCAATGCCACTTTTGTCCGGTCAATTTCAAGCGAAAACCAGATTTGAACGCACATTTGAAAATTCATTCCAAACAAAGAGACAAACACTACAATGCGCTAGAGTCTAACATCAGTCTCAATTCCAAGGAGAATAGTAACCTTCACAGCGATTCATTTGAATGCAACATTAGCAATAGATCACTTTCTAACCAAAGAACGGAGAAAACTGATTTGATGGATGTAACAATTGTGGTACAGGAGCAGAATCCATTCAAGTGCAGCCTTTGCGAGGAATCATTTTTGCAATCGGAAAGTTTAGAAGCACATGAGCGAAAAGAGCATGAAGACATTTGTTATTCATATTGCTGTGAAGATTGTAATGATCGATTTCGCGACGAGAAAGAATTGACAGATCATATTTCTGAAACTCACTTCTTCAAATGCGGCCAATGTCGGAAGCGTTTCAAAACCTGGGAAGAATTGGAAAAACACTCGGAACTGCATTTGGACGAAAAATGTTCCGCGGATGACGAGTCTCTTGCTGATATTCAAAATCATTTCTCCGACGAAGAGTCATACAAATGCGATTTAAGTCCGATCAGCTTCAAACACGAACCTGATGTACATTTGAGTATCCACTCTGGGGACAGTGGTGATGAAGAACACAACAAGTTTGAATGCGACATGTGTCATGGATCGTTTCCCACTTATTCATCGATGAAAACACATATGATGAAAGTTCATGTCGGGAACTTGAAACGGAAGCGAATCTCGAACACGTTTGAGTGTACTATTTGCAATAAATCGTTTTCGCAATCGAAGAACTTAACATCTCATGAGTGGGAAGAGCACCGAGACATGCGTTATCAATTTAGCTGCAAAGATTGTGGTGACCGATTTCGCGAAGAGAAAGAATTGGCTGACCATAGCGCGCAGATTCACTTTTCGAAGGCCGAATCGAACAATGCGGAAGAGTTGGCCCACCTTTCGGACGACAAACCCTACAAATGTGACAAATGTGGTGCCGCTTTCAGAACCTCCAAGAGCTTAAAGGAGCACATGCGGAGCCATACGGATCAACGACCATTTCAATGTGAAATGTGCGGTAAAGACTTCAAATATCGTAAAGGATTGAGACATCACAAGGCTACGTATCATGAAGGAAAACGATTCGAGTGTACCGTATGTAACGCTAGTTTTACGGATAAATCAATCTTAACGAAACACTTGAGAATTCATAATGGTGAAAAGCCTTACAGTTGCGAGATTTGTCCCGCTCGCTTTACACGAAAAGATGGCTTGTCGATCCATTTGAAAACACACAGTGGTGAGAGACCTTATCCATGCGAAATTTGTGCAGCTGCATTTGCAACCTCATGGCACTTGAAAAGACACAAATCCAGACACTTCGAAGATAGACCCTACAAATGTGTCGATTGTTCCGCTGATTTTAAGACTTCGGATGGTTTAAAAAGTCATATGGTTTCCCACTCCGACGAGAGATCGCACAAATGCGATTTATGTGTGCTGAGTTTTAAACGGAAACCAGATTTGACCGCACATATGAGAATTCATACCATGGAGCGACCTTTTCAATGTACCAAGTGTGCAGCTGCATTCATTACAAGTTCAGCTTTAACTCAGCACAAACGTGTTCATTCAAACGAGCGGCCTATTGCATGCAGTGTTTGTTCGTCTTCTTTTAAAACCGCAAAAACGTTGAAGAGACACATGCGTACCCACAACGATGAGAAGCCTTATGAATGCGACATTTGTACCTTGAAATTTGCTCGATCTGATTATCTACACGCTCACGTCAAGCGGTTCCATACCATCGAAACAGCAGCCAAAAGCAAGAAGACCATTCCAAAATAG
Protein Sequence
MCGREFKYRKGLMYHKETYHEGRRFKCNVCDASFSDKSALTKHLRIHKGVKPYSCDICFTNFTQKTHLTFHLRTHSGEKPYQCQVCDASFAAPWSLKTHKATHNDVRPYRCVECGAGFKTPGGLRSHMVIHSDKRPHQCHFCPVNFKRKPDLNAHLKIHSKQRDKHYNALESNISLNSKENSNLHSDSFECNISNRSLSNQRTEKTDLMDVTIVVQEQNPFKCSLCEESFLQSESLEAHERKEHEDICYSYCCEDCNDRFRDEKELTDHISETHFFKCGQCRKRFKTWEELEKHSELHLDEKCSADDESLADIQNHFSDEESYKCDLSPISFKHEPDVHLSIHSGDSGDEEHNKFECDMCHGSFPTYSSMKTHMMKVHVGNLKRKRISNTFECTICNKSFSQSKNLTSHEWEEHRDMRYQFSCKDCGDRFREEKELADHSAQIHFSKAESNNAEELAHLSDDKPYKCDKCGAAFRTSKSLKEHMRSHTDQRPFQCEMCGKDFKYRKGLRHHKATYHEGKRFECTVCNASFTDKSILTKHLRIHNGEKPYSCEICPARFTRKDGLSIHLKTHSGERPYPCEICAAAFATSWHLKRHKSRHFEDRPYKCVDCSADFKTSDGLKSHMVSHSDERSHKCDLCVLSFKRKPDLTAHMRIHTMERPFQCTKCAAAFITSSALTQHKRVHSNERPIACSVCSSSFKTAKTLKRHMRTHNDEKPYECDICTLKFARSDYLHAHVKRFHTIETAAKSKKTIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-