Phyg027133.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:120884570-120887035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.8e-06 0.00047 22.0 0.9 1 23 96 118 96 118 0.98 2 24 0.043 5.2 9.3 3.0 1 23 124 146 124 146 0.95 3 24 0.0022 0.27 13.4 0.7 1 20 152 171 152 173 0.93 4 24 5.4e-06 0.00066 21.6 2.3 1 23 200 222 200 222 0.96 5 24 0.067 8.2 8.7 3.0 1 23 228 250 228 250 0.95 6 24 0.00062 0.075 15.1 0.5 1 22 256 277 256 277 0.94 7 24 0.00052 0.064 15.3 3.9 1 23 282 304 282 304 0.98 8 24 9.2e-07 0.00011 24.0 1.3 1 23 310 332 310 332 0.97 9 24 3e-06 0.00037 22.4 1.0 1 23 338 360 338 360 0.98 10 24 1.9e-05 0.0023 19.9 1.4 1 23 366 388 366 388 0.97 11 24 1.2e-06 0.00015 23.6 1.1 1 23 394 416 394 416 0.97 12 24 3.6e-08 4.4e-06 28.4 1.5 1 23 422 444 422 444 0.99 13 24 1e-06 0.00012 23.9 0.5 1 23 450 472 450 472 0.97 14 24 4.7e-05 0.0058 18.6 1.0 1 23 478 500 478 500 0.97 15 24 4e-06 0.00049 22.0 0.2 1 23 506 528 506 528 0.98 16 24 3.9e-06 0.00048 22.0 3.0 1 23 534 556 534 556 0.97 17 24 0.00072 0.088 14.9 2.6 1 23 562 584 562 584 0.98 18 24 1.1e-06 0.00014 23.7 1.6 1 23 589 611 589 611 0.97 19 24 0.0021 0.26 13.4 5.1 3 23 619 639 617 639 0.97 20 24 3e-05 0.0036 19.2 0.8 1 23 645 667 645 667 0.97 21 24 0.00031 0.038 16.0 1.4 1 23 673 695 673 695 0.98 22 24 0.00065 0.08 15.0 4.1 1 23 701 723 701 723 0.98 23 24 5.8e-05 0.007 18.3 1.6 1 23 729 751 729 751 0.97 24 24 0.0042 0.52 12.5 0.7 1 23 757 779 757 779 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAGTGTGGATTAAGACAGAACCAGTGGAAACTGAATGTTCCAATTACTTTTGCGTGAAACCAGAGGTCGAACATACCATCGAAAAGGTTGGACCATCTCCGCTATCACCGTCAATTCCCACTAACTCTATAAAATATGAAGATGTCATCGTCAAGTCTGAAATTACCATCGAAGATTACGACGAATGTGAAACAACTAGCCAAGTACCGCAGCCGGAGGAAAATGGGTTTTGTGCAAAACCAATATATAAATTGGATCCACAGATCTACTTTCATCTGTTCATGTGTGACatatgcgaaaaaaaattcgttgaCAAAGCAAGACTTACCAGACATTTACGTTCACACACCGGGGAAAGACCTTTCGCTTGTGACGAATGTGGAATGAGATTTGCACAAAAGTGTCATGTGAAGCCTCACAAGTTGACACACACCGGTGAGAAACCGTTTGCTTGCGACAAATGTCATGCTAAATTTACAACGAAATCGGGCGTCAATAAGCACCGGGAAATTAGCAGGGAGTGTGGAAGCAAATCTACTCAAAGCGCGCACCCAGCCATTCACCTTCAATCGCACATCAAAGACAGATCGTTTGATTGTGACGAATGCGGCAAACAGTTCAACCGTAAGGATAGTCTCAGCAGACACAAACGTTTCCATTCCGGTGAAAAACCGTTCGCTTGCGACGAATGTGGAATGAGATTCGCTCAAAAGTGTCACATTAAGCCACACAAGCTGACACACAGCGGCGAGAAACCATTCGCTTGCGACAAATGCAGCGCTAAATATACAACGAATTCGGGTCTCAAAAAGCATCAATTGACCTGTCAAACTGTATTTTCTTGTGATGAATgtggaaaacaattttgccaGATGCTTAGTTTGACAAATCACTTCAAAACGCACAACTCTCTCAAGTCGTACGACTGCGAAGAATGTGGAAAAAAGTTCACCCGAAAGGACAGCCTTTATAGACACAAACTTGTTCATTCTGGCGAACGGCCATACACATGCGGCGAATGTGGATTAGCGTTCTCTCAAAGTGGCCATCTAAGATCTCACAAACTGACACACACCGGCGAGAAGCCGTTCGCTTGCAACGAATGTGGAATGCGATTCAGTCAAAAAAGTCAAATCAAAACGCACAAATTGACGCACACGGGGGAGAAGCCCTTTGCATGTGAAGAGTGTGGAgtaaaattcaaacgaaaaTCTTCTCTCAAAGTTCACCGGAAGATGCATATCATTGACAAAAGTTACAGTTGCGAGGAATGTGGAGAATGTTTTCCTTCAAGAGACAACCTTGAGAAACATCAACGAACTCACTCTGGCGAAAGACCGTTCGAGTGTGAAGAATGTGGAAGAAAATTCTCGGAGAAGGGAAATCTGAACAAACACCAAGAACTTCATACGGATGAGAAGCAGTTCGCTTGTGATGTGTGCGAtatgaaattttcgcgaaaaagttATGTAAAAGCTCACCGACTCAAACATACCGGAGAGCAGCCGTTCATCtgcgatttatgtggaaaagcTTTCACTTTAAAAGCTAATCTTCTGCTTCACTTACGAATGCACACGGGGGAAAGGCCGTTCGATTGCGAGGAATGTGGAAAATCGTTTTTCCGCAAGACTTCTCTTTTGAAGCACAAACGTAAACATTCGGAAGTTAAAGTTTTCACGTGCAAACGATGCCGACTGACCTTTGACCAATACTCCGAGTTACAGTCACACAGACTTAGCCATACAGACAGACCTTTCGTTTGTGACGAATGTGGCAAAGGCTTTACTGAGAACAGTCACCTAACGAGACACAAACTTTCCCATTCTGAAGAAAAGCCATACGGCTGCGATTTATGTGAGAAAAGATTTTACCACAAAGATCTACTAAAACATCACAGACTAAGACATTCCGGCGAAAGACCATTCGCTTGTGACGAATGTGGCGCAAGGTTCAGCAGTAAATCGTATATCAAGCGACACAAGTTGACGCATACCAACGAGAAACCATTCTCTTGCGATGAGTGCGGGAAAAGGTTTCTGATGAAATCCCAAGTCAAATCGCATCAAATGACGCACACTGGCGAGAGACCATACCCTTGCGACGAATGTGGAATGAGATTCACCAAGCCGTGCCACGTTAAATCACACAAACAAACGCACACCGGCGAGAGACCATTTCCTTGCGAAGAATGTGGTCTAACgttcaccaaaaaattctatcTCAATTCGCACAAGTTGAAGCACAAAGGCATTAGACCATTCCTTTGCAGCGAATGTCCTGCGAATTTTTTTACCAAAACGGGACTGAGACAACACGAAAAGTCACACTCCGCAAAATCagagaaacaacaaaaagcaacgcaaaaattggaaataaaaacGGAATCCGTAGCAATGAGCGCTTATTTCGAAGGTGACAACCGAAGAATCAAAACGGGAAATATTGATAAAAAGTAG
- Protein Sequence
- MEEVWIKTEPVETECSNYFCVKPEVEHTIEKVGPSPLSPSIPTNSIKYEDVIVKSEITIEDYDECETTSQVPQPEENGFCAKPIYKLDPQIYFHLFMCDICEKKFVDKARLTRHLRSHTGERPFACDECGMRFAQKCHVKPHKLTHTGEKPFACDKCHAKFTTKSGVNKHREISRECGSKSTQSAHPAIHLQSHIKDRSFDCDECGKQFNRKDSLSRHKRFHSGEKPFACDECGMRFAQKCHIKPHKLTHSGEKPFACDKCSAKYTTNSGLKKHQLTCQTVFSCDECGKQFCQMLSLTNHFKTHNSLKSYDCEECGKKFTRKDSLYRHKLVHSGERPYTCGECGLAFSQSGHLRSHKLTHTGEKPFACNECGMRFSQKSQIKTHKLTHTGEKPFACEECGVKFKRKSSLKVHRKMHIIDKSYSCEECGECFPSRDNLEKHQRTHSGERPFECEECGRKFSEKGNLNKHQELHTDEKQFACDVCDMKFSRKSYVKAHRLKHTGEQPFICDLCGKAFTLKANLLLHLRMHTGERPFDCEECGKSFFRKTSLLKHKRKHSEVKVFTCKRCRLTFDQYSELQSHRLSHTDRPFVCDECGKGFTENSHLTRHKLSHSEEKPYGCDLCEKRFYHKDLLKHHRLRHSGERPFACDECGARFSSKSYIKRHKLTHTNEKPFSCDECGKRFLMKSQVKSHQMTHTGERPYPCDECGMRFTKPCHVKSHKQTHTGERPFPCEECGLTFTKKFYLNSHKLKHKGIRPFLCSECPANFFTKTGLRQHEKSHSAKSEKQQKATQKLEIKTESVAMSAYFEGDNRRIKTGNIDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -