Phyg021187.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:66475925-66478510[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 7.8e-07 9.6e-05 24.2 0.6 1 23 45 67 45 67 0.96 2 22 1.9e-05 0.0024 19.8 2.4 1 23 83 105 83 105 0.98 3 22 2.6e-05 0.0032 19.4 1.2 1 23 111 133 111 133 0.97 4 22 2.2e-06 0.00027 22.8 0.7 1 23 139 161 139 161 0.98 5 22 4.8e-05 0.0059 18.6 0.7 1 23 167 189 167 189 0.96 6 22 6.8e-06 0.00084 21.2 2.1 1 23 195 217 195 217 0.98 7 22 7.4e-07 9e-05 24.3 1.8 1 23 223 245 223 245 0.98 8 22 4.9e-05 0.006 18.6 0.8 2 23 321 342 320 342 0.95 9 22 0.036 4.4 9.5 1.8 1 15 348 361 348 367 0.77 10 22 5.2e-06 0.00063 21.6 1.2 1 23 374 396 374 396 0.95 11 22 1.2e-05 0.0015 20.5 0.8 1 23 402 424 402 424 0.97 12 22 2.7e-06 0.00034 22.5 1.5 1 23 430 452 430 452 0.98 13 22 1.2e-06 0.00015 23.6 0.5 1 23 458 480 458 480 0.98 14 22 0.00052 0.064 15.3 2.5 1 20 486 505 486 508 0.93 15 22 0.00029 0.035 16.1 1.8 1 23 514 536 514 536 0.98 16 22 8.2e-05 0.01 17.8 0.2 2 23 670 691 669 691 0.95 17 22 0.028 3.5 9.9 0.6 1 13 697 709 697 710 0.89 18 22 2.9e-06 0.00036 22.4 1.2 1 23 724 746 724 746 0.96 19 22 1.4e-05 0.0017 20.3 0.9 1 23 752 774 752 774 0.97 20 22 4e-06 0.00048 22.0 0.9 1 23 780 802 780 802 0.98 21 22 2.6e-06 0.00032 22.6 0.4 1 23 808 830 808 830 0.97 22 22 0.00053 0.065 15.3 2.9 1 20 836 855 836 858 0.93
Sequence Information
- Coding Sequence
- ATGACTGAGCTCTTAACAAAAGCACCAGCTGAAGTAGAAGAAGACAATGATGTGGGCCGTAACACCGAAAATGCTGATACGGACGCAGTAAATGTAAAATCAAAATCCAACCTTCAAGTCAGACAAAGTAAATTCATTTGTAACGAATGTGGGAAAAAGTTCAATCAGAAGGCAAACTTGGTGTCTCACATGACACTACACACTGGTGTGTTAATACCTCACGAACGGACACACAGAGAAAAACCTTTCACGTGCGATGAGTGCGGCATGAAATTTGTGCAAAAAAACCATCTAATTTCACACAAACGATTGCACAGTGGCGAGAAACCGTTTTGCTGCGATCTATGTGATGCTAGTTTTGCTAGAAAAGAGTATCTTCAAGTTCATCAGCGAGCTCATAACGGTGAAAGACCATTTGTATGCGACGCATGTGGAAAGAGTTTTCCTAGAAAAAATCAACTAACATCTCACTATATGACGCACACCGGCGAAAAACCTTTTCCTTGTAATGAATGCGACATGAGGTTCACCAGACCATATCTTCTTAGTCAACACAAACTACAACACAGTGGTGAGAAACCATTCAAGTGCGATGAATGTGAAATGAGATTCACTCAGAAATCGTCTTTAAAAGCACACAAATTGAAGCACACCGGCGAGAATCCGTTTTCGTGTAAGGAATGTGGCAACAGTTTCAGAACGAACGCTTGGctaaaaaaacaccaaaaaactCACATCCGAAAGTTATTGAAACCCTTGAAACCACAGAAAAAAATAGACGATGTGATGACGTATCCCGAAGTTTCATTTGTCAGCAAAGGAAGTAGCGTCAAGTTGAATGACTCCGATGATCATCTGAATGTCAAGACGACAGAGAAAAACTTAGCAATTAAAGTCATGCAATCAATCGCTTGCGACAAAAAACGTGAATACAGACGAAAAGGTAGTGGAACATATCTAACTTGCGATGAATGTGGAAAACAGTTTACCAACTCTCGAAGTCTGGCGCAACACAACAAATTGCATTCGGGTGAGATGCCATTCGCCTGCAACGACTGTGGGAAGGCGTTTCGTTATCAGCACGTATGTATTCACAGAGATGAAAAGGATGGAAAGGCATTCATTTGTGACGAATGCGGCAAGCAATTTACGACAAGTTCTAATCTCTACAGTCACAAAAGCTTACATTCTGGTGAGAAGCCTTTCGCCTGTGATGAATGCGGAATAAGATTTGCCCAGAAATCACATTTGCAAGGGCACAAACTCACGCACACTGGTGAGAAGCCTTTCTCTTGCGAAGTGTGTGGTACAAGATTCACATCAAAATCGAGTGTTCGAATTCATCAACGAAAGCATACGGGCGAGAAACCTTTTGTCTGCAGTTTGTGCGGAACGAGATTTTCCCAGAAAAGTGCACTAACGTCCCATCAGTTGGTACATACGTCGGAAAGGCTATTCAATTGTGACAAATgtggcaaaaaattcaagagaaGAACAGGtttaaatttgcacaaatgGAAGCATACCGGAAATAAACCATTTTCGTGTGAAGAATGTGGCAGCAACTTCAAATCGAACGCTCGGCTAAAACAACACAAAAAGACACACTTGGGAAAGTTATTTAAATCACACAATAAAATCGAAACTGTTACAATTAACTTCGATGTTTTATTTGGCAGCAAAGTGAGTAACGTGAATTGTAATGATTTTGAAGATAATTCGAATGCCAAGACGCAAGAGAAAATGTTTATAGTTAACGAAAAGCAATTCGAACGCGATGAAATAAAAACTGACTCACAATTGTGTACCAACGTAAAGCCTTGTCCTTCCGACGATGACGCGAAATATGAAGATGAGCCAATAATCGAAATCATTCAAGACATAGATAAGAATATAGAAACGTCATTGGGCTGTAATAAAAATTCAGACAAACAGACGCCTACTATACTATCAAtctccagcgaaaaaaaacgtGAATACAGACGAAAACCTGATGGAAATGTTCTTCCTTGCGAAGAATGTGGAAAACAGTTTTCGAACGCTCGAAGTCTGGCGCAACACAACAAGTTACATTCGGGTGAGAAGCCATTCGCCTGCAACGACTGTGGGAAAGCGTTTCGTTACCAGCATGTTTGCGTACGTAGAattaaaaaaagtcaaaaggTGGTATTCGTTTGTGACGAATGCGGAAAGCAATTCACGACAAGTTCTAATCTCTACAGTCACAAAAGTTTACATTCTGGGGAGAAACCTTTCGCATGTGATGAATGTGGAATAAAATTTGCTCAGAAATCACACTTACAAGGGCACAAACTAACGCATACTGGTGAGAAGCCTTTCTCTTGCGATGAGTGTGGTGCACGATTTACATCAAAATCGAGTGTTCGAATTCATCAACGAAAGCATACGGGCGAAAAGCCTTTTGCCTGCAGTTTGTGCGGAACAAGATTTTCACAGAAAAGTGCATTAACGTCCCACCAATTGGTACACACAGCGGAGAGGCtattcaattgtgaaaaatgcggaaaaaaatttaaaaggaGGAGAGGTTTAAAGCTACACAAGTGGAAGCACACCGGCGAATAG
- Protein Sequence
- MTELLTKAPAEVEEDNDVGRNTENADTDAVNVKSKSNLQVRQSKFICNECGKKFNQKANLVSHMTLHTGVLIPHERTHREKPFTCDECGMKFVQKNHLISHKRLHSGEKPFCCDLCDASFARKEYLQVHQRAHNGERPFVCDACGKSFPRKNQLTSHYMTHTGEKPFPCNECDMRFTRPYLLSQHKLQHSGEKPFKCDECEMRFTQKSSLKAHKLKHTGENPFSCKECGNSFRTNAWLKKHQKTHIRKLLKPLKPQKKIDDVMTYPEVSFVSKGSSVKLNDSDDHLNVKTTEKNLAIKVMQSIACDKKREYRRKGSGTYLTCDECGKQFTNSRSLAQHNKLHSGEMPFACNDCGKAFRYQHVCIHRDEKDGKAFICDECGKQFTTSSNLYSHKSLHSGEKPFACDECGIRFAQKSHLQGHKLTHTGEKPFSCEVCGTRFTSKSSVRIHQRKHTGEKPFVCSLCGTRFSQKSALTSHQLVHTSERLFNCDKCGKKFKRRTGLNLHKWKHTGNKPFSCEECGSNFKSNARLKQHKKTHLGKLFKSHNKIETVTINFDVLFGSKVSNVNCNDFEDNSNAKTQEKMFIVNEKQFERDEIKTDSQLCTNVKPCPSDDDAKYEDEPIIEIIQDIDKNIETSLGCNKNSDKQTPTILSISSEKKREYRRKPDGNVLPCEECGKQFSNARSLAQHNKLHSGEKPFACNDCGKAFRYQHVCVRRIKKSQKVVFVCDECGKQFTTSSNLYSHKSLHSGEKPFACDECGIKFAQKSHLQGHKLTHTGEKPFSCDECGARFTSKSSVRIHQRKHTGEKPFACSLCGTRFSQKSALTSHQLVHTAERLFNCEKCGKKFKRRRGLKLHKWKHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -