Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055404.1:108364014-108375392[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.0015 0.19 13.8 3.2 1 23 70 92 70 92 0.97

2 30 8.8e-08 1.1e-05 27.2 0.5 1 23 98 120 98 120 0.98

3 30 0.00032 0.039 16.0 0.5 1 23 126 148 126 148 0.98

4 30 0.00035 0.042 15.9 2.4 1 23 154 176 154 176 0.98

5 30 2.2e-05 0.0027 19.6 2.4 1 20 182 201 182 204 0.94

6 30 0.00019 0.023 16.7 0.5 1 23 210 232 210 232 0.97

7 30 0.00081 0.099 14.7 4.4 1 23 238 260 238 260 0.98

8 30 0.00014 0.017 17.1 1.3 1 23 266 288 266 288 0.97

9 30 0.00033 0.041 15.9 1.6 1 23 294 316 294 316 0.98

10 30 0.00018 0.022 16.8 1.3 1 23 464 486 464 486 0.98

11 30 6.3e-06 0.00077 21.4 0.6 1 23 492 514 492 514 0.95

12 30 0.0018 0.23 13.6 0.2 1 23 520 542 520 542 0.98

13 30 6e-07 7.3e-05 24.6 1.9 1 23 613 635 613 635 0.98

14 30 0.00036 0.044 15.8 3.3 1 23 641 663 641 663 0.97

15 30 0.00052 0.064 15.3 1.5 1 23 675 697 675 697 0.98

16 30 1.5e-05 0.0018 20.2 0.4 1 23 703 725 703 725 0.96

17 30 0.00053 0.065 15.3 3.0 1 23 731 753 731 753 0.98

18 30 4.1e-06 0.0005 22.0 4.5 1 23 759 781 759 781 0.97

19 30 0.00058 0.071 15.2 0.4 1 20 787 806 787 809 0.91

20 30 2.9e-05 0.0035 19.3 2.8 1 23 815 837 815 837 0.98

21 30 1.4e-05 0.0017 20.2 0.2 1 23 843 865 843 865 0.97

22 30 0.067 8.1 8.7 3.4 1 23 871 893 871 893 0.96

23 30 0.00018 0.022 16.8 0.7 1 23 899 921 899 921 0.97

24 30 0.00033 0.04 16.0 1.8 1 23 927 949 927 949 0.98

25 30 0.0021 0.26 13.4 4.0 1 23 955 977 955 977 0.98

26 30 4.9e-05 0.006 18.5 2.6 1 23 983 1005 983 1005 0.97

27 30 0.00017 0.021 16.8 1.5 1 23 1011 1033 1011 1033 0.98

28 30 2.3e-05 0.0028 19.6 1.0 1 23 1193 1215 1193 1215 0.98

29 30 1.2e-05 0.0014 20.5 1.1 1 23 1221 1243 1221 1243 0.93

30 30 1.2 1.4e+02 4.8 0.9 1 16 1249 1264 1249 1266 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.0015	0.19	13.8	3.2	1	23	70	92	70	92	0.97
2	30	8.8e-08	1.1e-05	27.2	0.5	1	23	98	120	98	120	0.98
3	30	0.00032	0.039	16.0	0.5	1	23	126	148	126	148	0.98
4	30	0.00035	0.042	15.9	2.4	1	23	154	176	154	176	0.98
5	30	2.2e-05	0.0027	19.6	2.4	1	20	182	201	182	204	0.94
6	30	0.00019	0.023	16.7	0.5	1	23	210	232	210	232	0.97
7	30	0.00081	0.099	14.7	4.4	1	23	238	260	238	260	0.98
8	30	0.00014	0.017	17.1	1.3	1	23	266	288	266	288	0.97
9	30	0.00033	0.041	15.9	1.6	1	23	294	316	294	316	0.98
10	30	0.00018	0.022	16.8	1.3	1	23	464	486	464	486	0.98
11	30	6.3e-06	0.00077	21.4	0.6	1	23	492	514	492	514	0.95
12	30	0.0018	0.23	13.6	0.2	1	23	520	542	520	542	0.98
13	30	6e-07	7.3e-05	24.6	1.9	1	23	613	635	613	635	0.98
14	30	0.00036	0.044	15.8	3.3	1	23	641	663	641	663	0.97
15	30	0.00052	0.064	15.3	1.5	1	23	675	697	675	697	0.98
16	30	1.5e-05	0.0018	20.2	0.4	1	23	703	725	703	725	0.96
17	30	0.00053	0.065	15.3	3.0	1	23	731	753	731	753	0.98
18	30	4.1e-06	0.0005	22.0	4.5	1	23	759	781	759	781	0.97
19	30	0.00058	0.071	15.2	0.4	1	20	787	806	787	809	0.91
20	30	2.9e-05	0.0035	19.3	2.8	1	23	815	837	815	837	0.98
21	30	1.4e-05	0.0017	20.2	0.2	1	23	843	865	843	865	0.97
22	30	0.067	8.1	8.7	3.4	1	23	871	893	871	893	0.96
23	30	0.00018	0.022	16.8	0.7	1	23	899	921	899	921	0.97
24	30	0.00033	0.04	16.0	1.8	1	23	927	949	927	949	0.98
25	30	0.0021	0.26	13.4	4.0	1	23	955	977	955	977	0.98
26	30	4.9e-05	0.006	18.5	2.6	1	23	983	1005	983	1005	0.97
27	30	0.00017	0.021	16.8	1.5	1	23	1011	1033	1011	1033	0.98
28	30	2.3e-05	0.0028	19.6	1.0	1	23	1193	1215	1193	1215	0.98
29	30	1.2e-05	0.0014	20.5	1.1	1	23	1221	1243	1221	1243	0.93
30	30	1.2	1.4e+02	4.8	0.9	1	16	1249	1264	1249	1266	0.86

Sequence Information

Coding Sequence: ATGGAAGAAGTTTCGGTTAAGACTGAACCTCGTGAGGAACCAGACAACGTTGAACATTTCCATTTtgtaaatgtgaaatgtgaaacaGAACTTGACGTCGGCAAGACATCACTACCATCTCAGAAGAGCGGTGAATCTGGCGAACTAAATGAATCATCAAGCACAACTCTCACCAAACGAAAAATTAGTCATTCTGAGGATAAGATATTCGCTTGCGACGCATGCGATATGAAGTTTCAGCAGAAAGTTCATCTTAACCGACACAAACGAAAGCACACTGGTGAATCTCCCTTCCCTTGTGAGGAATGTGGACAATCATTCACGCGAAGGTCGAATCTTCTTATTCATTTACGGAAACACACAGGTGAGATATCATTCGTTTGCGACGAATGCGGCGAAACTTTTCTTCAAAGGGCAAATCTTTCAAAGCATAAGCTTAAGCATTCGGACGTAATATCTTTCTCATGTACTAAGTGTGGTCTGGCGTTTGACCAAAAATGTGACTTACTATCGCACAGGCTTACTCACAGCACAGAAAGGCCGTTTGTTTGTGAAGACTGCGGCAAAAGTTTTGCTGAAAAAAGTAGTCTTAGAAGGCACAAGCTTTGCCATACTGGAGAGAAGACTTTTGCTTGCGATGAATGTGGTAAGAAATTCCTTCGAAAAGGCCAACTTGCGTCCCACAAAATGACGCATACCGGCGAAAGACGCTACGCTTGCGATGAATGCGGAATGAGATTCACGAAACCTTGTCACGTCCGATCACACAAGCGAACGCACACTGGCGAACGTCCGTTTCCTTGTGATGAATGTGGATTGAGGTTCACTACAAAATTGTATCTTAAATCACATAAACTGAAGCACACGGGCGAAAGACCGTTCCCCTGCAGCAAATGTCCAAAGAGATTTTATACTAAAACAGGGGTGAGACAACATGAGAGATCGCATAATGGAAAGCCCGAGAAAGTGGAGAAATCAGTGCACAGGAAACCCCAAATTAAAACGGAAGTAGATTCGAGTTTTACAACTAATGATAGCTATACCGAGAATAGTGGCCAAGTATTCACCCAGACTTTTGACGATTTAAATGTGGAAGCGCATGAAGTGACACAAACAGATCAGAATGGAACGGAAATCAGAGAAATTCAAGAAGTAGAAATCTTACAGCCGCATGTATATGAAGCAACACCGACTCAAAAATCTTGCGATAAAATCGAAATGCTGGACTTAAAAGATGAAGAAGAGTCGGCACAAATATATTCAATGGAGCAGCACTTTCTTATGGATGAAATTGCCGCCACGATTGTGGAGAAATTGAACGTTGAAATGCCTTGCGACAAAAGTCTAAAGAAAAATGTACCTAAAACAAAACGTTACACTGAGAAGCCTTTTTGTTGCAACGAGTGTGACGCAGCATTTGCGTCGGAAGCGACTCTCAAATATCATCGGCGGACACACACCGGTGAAAATTGTTTCGTTTGTGACGAATGTGGAAAGGCATTTAACCGGAGCGATACGTTGGCAAGACACAAGTATTATCACACCGGCGCTAGGCCATTTTCTTGTGATGAATGCGGAATGACATTTGCCGCAAAAAGTGTTGTGCTGACACACTTACGTCGGCATTTTGTTTGGATAAAGACGGAACCGGACTATGAAGATACTCTGGTCAGTATAAAATCTGATGAGGAGGCAGGCCCATCTCCTGCTATTTCCATTAATAAAATAAAGTCAGAAGGACTGAGCATAAAAAGTGAAACTTCGCTCGGTGATTATGAATCAAGCGCACTAAAAGCAACGTCGAATGGAAACGACACGAAATTTGAATTAGATGAGTTCGTTTGTGAAGAATGTGGAAAAAGCTTTGGTAACAAACATACTCTCCTTAGACATTTACGTTCCCATTCAAAGGAAAAGCCGTACGCTTGCGACGAATGTGGAATTAAGTATAAACATCAGCGCACTCTAAAACAGCACAAAAAATCGCATTCCGGCGAGACTGTAAAGCCCCGCAAGAAGAAGTTCAATTGTGATCACTgtgacggaaaatttttttcaagaggTGGACTCGAAATACATCAACGGACACACACCGGTGAAAAGCCATACGAATGCGATGAATGCGACAAGAAATTCGGTGACAAGGGAAGTCTCACCAAACACAAAATTTGGCATTCCGGTGAAAAGCCATTTGAATGCGACGAGTGTgacatgaaattttatttcaaagaaaGGCTAAACCGACACAAACGGAGACATACCGGCGAGAAGCCCCACTCATGTGACGAATGTGGGAAGTCATTTGCACAAAAATACTATCTGCTTACGCATATGCGTCACCACTCTGGTGAGAGACCATTTGTTTGTGACGAATGTGGAAAGGCGTTTCTTCAAAAGTCTAGTCTTTTAAGACATAAACCTACGCATTCCAGTGTAAAGTCTTTCACATGCAATAAGTGCGGTCTGCATTTTGACCAAAGCGATGACTTAAAATCACACAGACTAACACACGCATCTGAAAAGCCGTTCATCTGCGAGGAGTGTGGTAaaaaatttgccgaaaaaagaAGTCTCGTAAATCACATGGCCAGTCATTCTGGAGAAAAACCCTTTGCATGTGATCAGTGTGGGGTGAGGTTCTATCTAAAGAAACATAAAAAACGACACGAATTGACACATACCGCAGTGAAAGCCTTCGCCTGCGATGAATGTGGAGCAAGGTTTAGAGAAAAGTCTACCTTGAAATTACACAAATTAAGGCACGGCAGCGAGAAACCATTCTCTTGCGATGACTGTGGCAAGAGATTTCTTCTAAAGTACCAACTCACTTCTCATAGGATGACGCACACCGGTGAAAAACGCTACGCCTGTGACGAATGTGGAATGAGATTCACCAAGCCATGTCACGTCAGATCGCACAAACAAACGCACACGGGCGAAAGACCGTTTTCTTGCGATGAGTGTGGATTAACgttcacgcaaaaattttacctCAAATCACATAAACTGAAGCACACGGGCGAGAGACCCTTCCCTTGCAGTTACTGTCCAAAGAGATTTTATACTAAGACAGGGGTGAGACAACACGAGAGATCGCACAACGGAAAGTCTGACAAACCACTGAAAGTAATAGAAGAGAAGCCGAAAAATGAGACAGAATTGGAAGCTGTAACTCTAAGCGCTGAAAGTAAGTTCGATGACTTCAAAAGCTGCGCAACATCAGAGGTTGAAGCAAATGCAATGGATAGGACCAGCGACACCAACGATTATAGTAGCAATCCATTTGATGAACTATTTGATGAATTGGATGTAGAAGATCCAGCATACACGCCAACTCCTAGCAACAAAATCGAAATGTCAACTCAAATGAATGAAACGACACCGATCCAAGGTGCTTGCGACATAAAAAAATTGCGCGAGTTAACGGAGGAAGTAGTTCCTGCCGAATTTACCGATAAAAAGCATACAATGCAGGAAGAGGCTGCTACTTTCGTCGATAAAGTATTTCTTCAAATGCCATCTGAAAGAACTCAAAAGAAAAACTCGCGTAGGAAGAAACGTTTCATCGAAAAGCCTTTCAGTTGTAATGAGTGTGACGAAAAATTTGCGTCAGAAGCGTATCTCAAATATCATCGGCGAACGCACACCGGCGAAAATATATATGTTTGTGACGAGTGTGGGAAAGCGTTTAATCGAAAAGATACTTTGGTCAAACACAAGTATTTTCACACCGGCGTCAAGCCATTTTTCTGTGATGAATGTGGAACGGCGTTCGCTGAAAAAGGGTGTTTGTCATCCTCGCGAATCAGACCGGGTGGCTCTAGAACGAAAGAAAAACCTGCTGAACAGAGAGCTCTTTTGATTATAGCGTTTATTGATGAGtgtcgaccatatctcccggTGCTTTTGTTGCAAGATAAGCCGTGA
Protein Sequence: MEEVSVKTEPREEPDNVEHFHFVNVKCETELDVGKTSLPSQKSGESGELNESSSTTLTKRKISHSEDKIFACDACDMKFQQKVHLNRHKRKHTGESPFPCEECGQSFTRRSNLLIHLRKHTGEISFVCDECGETFLQRANLSKHKLKHSDVISFSCTKCGLAFDQKCDLLSHRLTHSTERPFVCEDCGKSFAEKSSLRRHKLCHTGEKTFACDECGKKFLRKGQLASHKMTHTGERRYACDECGMRFTKPCHVRSHKRTHTGERPFPCDECGLRFTTKLYLKSHKLKHTGERPFPCSKCPKRFYTKTGVRQHERSHNGKPEKVEKSVHRKPQIKTEVDSSFTTNDSYTENSGQVFTQTFDDLNVEAHEVTQTDQNGTEIREIQEVEILQPHVYEATPTQKSCDKIEMLDLKDEEESAQIYSMEQHFLMDEIAATIVEKLNVEMPCDKSLKKNVPKTKRYTEKPFCCNECDAAFASEATLKYHRRTHTGENCFVCDECGKAFNRSDTLARHKYYHTGARPFSCDECGMTFAAKSVVLTHLRRHFVWIKTEPDYEDTLVSIKSDEEAGPSPAISINKIKSEGLSIKSETSLGDYESSALKATSNGNDTKFELDEFVCEECGKSFGNKHTLLRHLRSHSKEKPYACDECGIKYKHQRTLKQHKKSHSGETVKPRKKKFNCDHCDGKFFSRGGLEIHQRTHTGEKPYECDECDKKFGDKGSLTKHKIWHSGEKPFECDECDMKFYFKERLNRHKRRHTGEKPHSCDECGKSFAQKYYLLTHMRHHSGERPFVCDECGKAFLQKSSLLRHKPTHSSVKSFTCNKCGLHFDQSDDLKSHRLTHASEKPFICEECGKKFAEKRSLVNHMASHSGEKPFACDQCGVRFYLKKHKKRHELTHTAVKAFACDECGARFREKSTLKLHKLRHGSEKPFSCDDCGKRFLLKYQLTSHRMTHTGEKRYACDECGMRFTKPCHVRSHKQTHTGERPFSCDECGLTFTQKFYLKSHKLKHTGERPFPCSYCPKRFYTKTGVRQHERSHNGKSDKPLKVIEEKPKNETELEAVTLSAESKFDDFKSCATSEVEANAMDRTSDTNDYSSNPFDELFDELDVEDPAYTPTPSNKIEMSTQMNETTPIQGACDIKKLRELTEEVVPAEFTDKKHTMQEEAATFVDKVFLQMPSERTQKKNSRRKKRFIEKPFSCNECDEKFASEAYLKYHRRTHTGENIYVCDECGKAFNRKDTLVKHKYFHTGVKPFFCDECGTAFAEKGCLSSSRIRPGGSRTKEKPAEQRALLIIAFIDECRPYLPVLLLQDKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -