Basic Information

Insect: Pseudolycoriella hygida
Gene Symbol: -
Assembly: GCA_029228625.1
Location: CM055404.1:2517587-2520562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.00037 0.046 15.8 0.8 1 23 81 103 81 103 0.98

2 30 1.6e-05 0.0019 20.1 1.4 1 23 109 131 109 131 0.97

3 30 0.083 10 8.4 3.0 1 23 137 159 137 159 0.95

4 30 5.7e-05 0.0069 18.4 1.4 1 23 165 187 165 187 0.98

5 30 0.00021 0.026 16.6 1.1 1 23 193 215 193 215 0.98

6 30 1.3e-05 0.0016 20.3 1.0 1 23 221 244 221 244 0.97

7 30 8.1e-06 0.00099 21.0 3.7 1 23 250 272 250 272 0.96

8 30 0.078 9.5 8.5 3.8 1 23 278 300 278 300 0.96

9 30 4.5e-05 0.0055 18.7 1.3 2 23 307 328 306 328 0.97

10 30 0.00048 0.059 15.4 0.8 1 23 334 356 334 356 0.97

11 30 0.00011 0.013 17.5 0.3 1 23 362 384 362 384 0.97

12 30 1.5e-05 0.0018 20.2 2.6 1 23 387 409 387 409 0.97

13 30 1e-06 0.00013 23.8 1.1 1 23 415 437 415 437 0.98

14 30 0.0031 0.38 12.9 0.1 3 23 444 464 442 464 0.97

15 30 0.00022 0.027 16.5 0.7 1 23 469 491 469 491 0.97

16 30 6.6e-06 0.00081 21.3 2.0 1 23 497 519 497 519 0.97

17 30 0.016 2 10.6 1.0 1 23 525 547 525 547 0.96

18 30 1.3e-05 0.0016 20.3 0.1 3 23 562 582 560 582 0.97

19 30 1.1e-07 1.3e-05 26.9 0.5 1 23 588 610 588 610 0.98

20 30 9.5e-05 0.012 17.6 0.7 1 23 616 638 616 638 0.97

21 30 0.00084 0.1 14.7 1.7 1 23 644 667 644 667 0.97

22 30 1.8e-06 0.00022 23.1 0.7 1 23 673 695 673 695 0.98

23 30 0.00015 0.018 17.0 0.5 1 23 701 723 701 723 0.97

24 30 1.6e-05 0.0019 20.1 3.7 1 23 729 751 729 751 0.97

25 30 0.00013 0.016 17.2 1.5 1 23 757 779 757 779 0.97

26 30 0.00031 0.038 16.0 2.5 1 23 785 807 785 807 0.98

27 30 5.7e-06 0.00069 21.5 0.7 1 23 813 835 813 835 0.98

28 30 0.00057 0.07 15.2 1.1 1 23 841 863 841 863 0.96

29 30 2.2e-05 0.0027 19.7 1.0 1 23 869 891 869 891 0.97

30 30 0.002 0.24 13.5 2.3 1 23 897 920 897 920 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.00037	0.046	15.8	0.8	1	23	81	103	81	103	0.98
2	30	1.6e-05	0.0019	20.1	1.4	1	23	109	131	109	131	0.97
3	30	0.083	10	8.4	3.0	1	23	137	159	137	159	0.95
4	30	5.7e-05	0.0069	18.4	1.4	1	23	165	187	165	187	0.98
5	30	0.00021	0.026	16.6	1.1	1	23	193	215	193	215	0.98
6	30	1.3e-05	0.0016	20.3	1.0	1	23	221	244	221	244	0.97
7	30	8.1e-06	0.00099	21.0	3.7	1	23	250	272	250	272	0.96
8	30	0.078	9.5	8.5	3.8	1	23	278	300	278	300	0.96
9	30	4.5e-05	0.0055	18.7	1.3	2	23	307	328	306	328	0.97
10	30	0.00048	0.059	15.4	0.8	1	23	334	356	334	356	0.97
11	30	0.00011	0.013	17.5	0.3	1	23	362	384	362	384	0.97
12	30	1.5e-05	0.0018	20.2	2.6	1	23	387	409	387	409	0.97
13	30	1e-06	0.00013	23.8	1.1	1	23	415	437	415	437	0.98
14	30	0.0031	0.38	12.9	0.1	3	23	444	464	442	464	0.97
15	30	0.00022	0.027	16.5	0.7	1	23	469	491	469	491	0.97
16	30	6.6e-06	0.00081	21.3	2.0	1	23	497	519	497	519	0.97
17	30	0.016	2	10.6	1.0	1	23	525	547	525	547	0.96
18	30	1.3e-05	0.0016	20.3	0.1	3	23	562	582	560	582	0.97
19	30	1.1e-07	1.3e-05	26.9	0.5	1	23	588	610	588	610	0.98
20	30	9.5e-05	0.012	17.6	0.7	1	23	616	638	616	638	0.97
21	30	0.00084	0.1	14.7	1.7	1	23	644	667	644	667	0.97
22	30	1.8e-06	0.00022	23.1	0.7	1	23	673	695	673	695	0.98
23	30	0.00015	0.018	17.0	0.5	1	23	701	723	701	723	0.97
24	30	1.6e-05	0.0019	20.1	3.7	1	23	729	751	729	751	0.97
25	30	0.00013	0.016	17.2	1.5	1	23	757	779	757	779	0.97
26	30	0.00031	0.038	16.0	2.5	1	23	785	807	785	807	0.98
27	30	5.7e-06	0.00069	21.5	0.7	1	23	813	835	813	835	0.98
28	30	0.00057	0.07	15.2	1.1	1	23	841	863	841	863	0.96
29	30	2.2e-05	0.0027	19.7	1.0	1	23	869	891	869	891	0.97
30	30	0.002	0.24	13.5	2.3	1	23	897	920	897	920	0.96

Sequence Information

Coding Sequence: ATGGAAGAAGTTTGGATAAAAACCGAACCGAAAGACGATGACGAACATCCTCCTCCATATTTCTACATTAAATCGGAAGACGGAGTTAGTGTCGTCCAAGCTGAACCATCACTAGATGCTACTGTCTTTACTATTAAGCATGAATTACCATTTGAGGATGAGCTCAAATATTCACCACCACCGTCACCAACACAGATTACGACAAATGAAAAATCAGCTGGTGCATCGTTCGTCAAAAAATTCAGCTGCGATGAATGTGGATCAAAGTTTGCTAGAAAATCGGTGTATGAATTGCATCGCAGAATGCATCGTGGTGAACAACTTTTCGTTTGTGACATGTGTGGCAAAAATTTCTTCCTGAAGTCCAGTCTTATCAGACATCTACGCTTTCATACTGGTGAAAAGCCATTCGCTTGTGACGAATGTGGAATGAGGTTCGCGCAAAAGTGTCACATCAAACCTCATAAACTCACCCACACTGGCGAGAGGCCTTTCTCCTGTGATGAATGCGAAGCAAAGTTTGCATTGAAATCTAGCCTTAAAAAGCATAAACGGACGCACAGTGGCGAAACACCATATGAATGCACGGAATGTCCAAAGAAGTTCAGCCAAAGTGGAAGTGCCGCCAGCCACAGATGTGTCCATTTCACGGCAAAGCCGTTCATTTGCGAAGAATGTGGAGCAGGCTTCACTCAAAAAGGTCACTTGAAAACACACCGAATAACGAGACATACCGACGATAAGCCGTTTGCTTGTgacaaatgtgacaaaaaaTTCGTTCGAAAATCACATCTGGTCAGACATGAACGCTTTCACACTGGCGAAAAGCCATTTTCCTGTGACGAATGCGGAATGAGATTTGCTCAAAAGTGCCACATAAAGCCTCACAAATTGACGCACACCGGGAAACCACTGTTATCTTGCGATTTATGTGATTCGAAATATGCGTCTAAGTCGAGCCTCACAAAACATCAACGAACTCACATTAACGGCAAACCTTTCGATTGTGGCGAATGTGGACAAACATTCTGCGAAATGGAAAATCTCGTCAAGCACGAAAGTACTCACACTGGTTCAAAAGATTTTGCTTGTGATGAGTGTGGAaaagcattttatgaaaagGAAAATCTTGACAGCCACAAGCTTCGGCATTCGTCGTTCGTATGTGATGAGTGTGGAATGACATTCTCTCAAAGTTTCCACTTGAAAACCCACAAAGCCAGACATAGTGGAGAGAAACCTTACTCTTGCGATGAGTGTGGAGCTAGATTTGTACAAAAAAGTTCTTTAAAGAAACACACGAAAATGCACACTGGCGAGACAGATGACTGCACTGAATGTGGTGCAAAATTTTTATCGAAGTGGGCACTGCAAGTACATGTACGAACCCATACTGGCGAAAAATTTGCTTGTGACGAATGTGGAAAAGGATTCTGTGAACGTGGAAAGCTCGTCTTACATAAACGCGTGCACAGTGGTGAAAAACCGTATTCTTGTGAGGactgtggaaaaaaattttcccggaaaagctaCATTAAATCGCACAGACTTTTGCACACTGGTGAGAAGCCATTCACTTGTGATGAATGTGGTGACAGCTTTCTGCGATCGTCTACTTTAAAGGAACACAAAAGCCAACACTCCGGAGAGGTTGTAACCAAGGCTATCAATAAAAATGTCATCTGCGATGAATGTGGGGCGAAGTTCATTTCAAAATCGGCTCTTATAGTACATCAACGGAAGCATACTGGTGAAAGACCATTTGAATGCAGCGAATGtggaaaaacatttattgacaacGGCAATCTCAATAGACATAAGCTGACTCATTCTGAAGAAAAGCCCTTTGCTTGCAATCAATGTGAAATGAGATTTGTTCGCAATAGTCTCCTTAAGCAACATACCCTAATACACACAGGCGAGAAACCATTCTCTTGTGACCAATGTGAGCTGAAATATATATCGAAGTGCAGCCTTCAAAACCACATACGAATAATTCACTCCGGTGAAGCGCCGTACGAATGTTACGAATGCGGTAAAAAATTCAACCAAAAGGAGGGCCTGTCCAACCACATTCGTTTACACACTGGGGAAAAGCCATTCGCGTGCGACGTATGTGAAATGAGATTCACTCGAAAAAGTCAACTAAAGCCACATCTCCTCACACACAGCATTGACAAAATGTTTACCTGCGACGAATGTGGTAAAAAGTTCAACCGAAAGGCAAGTTTCCGCCGGCACAAATTCTCCCATACCGGTGAAAGGAAGTTCGCTTGTGATGAATGTGGAATGAGATTCATGCAAAAATCTACAATGAAGCAACACAAACAAACGCACACcggtgaaaaaccattttcttgCGATATATGTGGCATGAGATTCGCTCATAAAAGCTACGTACGGCTGCACAAAATGAAACACACAACTGAGAAACCTTTTTCGTGCGATGTTTGTGGAACGAAATTTGCCCGGAAAAGTCAGGTCAAATCACACATGGTAACACACACTGGCGACAGACCTTTTCCATGCAACGAATGCGaaatgagattttcaaaaaagtggcTCTTAAGGCAACACAAATTACAGCATAGCGGTGAAAAACCTTTTGCTTGCGAAGAATGTGGAATGAGATTTAATCAAAAGACTTCCTTGAAAGTGCACAAAATGAGACATACTGGTGAGAGACCATTTGAATGCAGCAAATGTTCTTCGAAATTCAGAACAAAGACCGGATTGAAACAGCATGAGAGACTACTGCACAACGGCAAGTCCAAGACTAAAGGAACATTGAATTCTAGCAACATTGGTGCCGCACCCGAGTTTGATAATTACGCTGCCGCCGTTCCATCGTCAAgcattacatttttttcaaacgacAATCGTACCATTCCTGCGACCAATGATAACGCATTCGTTTCCCACGACTACGATTTTGGCACTAGATTTATAGAGAAATTGGGATTCGGAATGCAGTAA
Protein Sequence: MEEVWIKTEPKDDDEHPPPYFYIKSEDGVSVVQAEPSLDATVFTIKHELPFEDELKYSPPPSPTQITTNEKSAGASFVKKFSCDECGSKFARKSVYELHRRMHRGEQLFVCDMCGKNFFLKSSLIRHLRFHTGEKPFACDECGMRFAQKCHIKPHKLTHTGERPFSCDECEAKFALKSSLKKHKRTHSGETPYECTECPKKFSQSGSAASHRCVHFTAKPFICEECGAGFTQKGHLKTHRITRHTDDKPFACDKCDKKFVRKSHLVRHERFHTGEKPFSCDECGMRFAQKCHIKPHKLTHTGKPLLSCDLCDSKYASKSSLTKHQRTHINGKPFDCGECGQTFCEMENLVKHESTHTGSKDFACDECGKAFYEKENLDSHKLRHSSFVCDECGMTFSQSFHLKTHKARHSGEKPYSCDECGARFVQKSSLKKHTKMHTGETDDCTECGAKFLSKWALQVHVRTHTGEKFACDECGKGFCERGKLVLHKRVHSGEKPYSCEDCGKKFSRKSYIKSHRLLHTGEKPFTCDECGDSFLRSSTLKEHKSQHSGEVVTKAINKNVICDECGAKFISKSALIVHQRKHTGERPFECSECGKTFIDNGNLNRHKLTHSEEKPFACNQCEMRFVRNSLLKQHTLIHTGEKPFSCDQCELKYISKCSLQNHIRIIHSGEAPYECYECGKKFNQKEGLSNHIRLHTGEKPFACDVCEMRFTRKSQLKPHLLTHSIDKMFTCDECGKKFNRKASFRRHKFSHTGERKFACDECGMRFMQKSTMKQHKQTHTGEKPFSCDICGMRFAHKSYVRLHKMKHTTEKPFSCDVCGTKFARKSQVKSHMVTHTGDRPFPCNECEMRFSKKWLLRQHKLQHSGEKPFACEECGMRFNQKTSLKVHKMRHTGERPFECSKCSSKFRTKTGLKQHERLLHNGKSKTKGTLNSSNIGAAPEFDNYAAAVPSSSITFFSNDNRTIPATNDNAFVSHDYDFGTRFIEKLGFGMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -