Phyg010737.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:118629650-118638439[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.1 1.9e+03 0.6 0.2 17 23 29 35 26 40 0.80 2 10 0.015 9.1 8.0 0.3 14 41 151 175 145 177 0.82 3 10 0.00063 0.38 12.4 0.4 11 43 182 208 178 209 0.89 4 10 0.38 2.3e+02 3.5 1.2 16 28 212 224 209 228 0.85 5 10 0.22 1.3e+02 4.3 0.1 19 33 251 262 244 271 0.79 6 10 0.086 51 5.6 0.1 17 40 280 300 273 302 0.79 7 10 0.016 9.6 7.9 2.5 15 29 305 319 297 335 0.80 8 10 1.3 7.8e+02 1.8 0.4 18 29 336 347 319 360 0.71 9 10 0.034 20 6.9 0.4 19 28 366 375 353 387 0.81 10 10 0.61 3.7e+02 2.9 0.1 16 30 421 435 403 444 0.80
Sequence Information
- Coding Sequence
- ATGACAAACCCCCTGGAGTTAGgtgaaaataagaaaagttaCAAATTCGGTGAAATTTATTGCACATTTGATGGACTTATGACAATTCACTGCAATTATTGTCCATCGAAAGTAAAAGATTTTGGTGAATTCAGTGTTCATTACATGGTGCACTTTGATGATGTGTTTGTGATCAAAAAAGAGGAAGAAACGTTGTTCGAACCGAGCGTCTACATTGAAGAAAAAGGTTCGGAAGTTAAAGTGAATATTGAGGAAGTTAACATATCCAGTTTCCACTTCGAAGACACTACACAACCTCCTGAATGTAAGCGGAAAACAAACCCTAAACGGGAACATCACAAAGTTCAGTCGAATCGAGAGCCCTCCAACAAACCGACTGGAAGCTCTGTATCATCCGTTGCAAAGTTACGGACAAAAAGTGTTGGTTCGAAATTGTCGAAACCAACGGAAAGGCCGAAACTGACTTGCAGGACTTGCAATCaacaatttgtaaataaaaccaCAATGGAGAAACATGTACGTAGTCACGAATTCGGTTTCCTACAAACGGCATACGAATGCGACATTTGTCAGCGACAAATCAAAAGCAAAAAGGACTTGCTGGATCACATGCGAAAGAAACACGCCGAACGAAAGTATGCTTGTAAATTGTGcaataaaaagttcaaaaatccaGCCTATGTTGCAGTCCACATGCGAGTACATATTGTTGACCCAACGAAGTCGCAGCTATTCGATGAGCCTCAACCGTGTCATATCTGCGGCAAAGAGTTCGTTAGTAAAGTGAATTACGCCCGGCATATAAAGAGTCATGCATTCGGATTCCTGCCACCAGTGTACGACTGTGATATTTGCGGTGATAAAATAAGTAACAAAAAGGACTTATCTGACCACATGCGCTTACATGCTCAACCAAAGTACGAATGCAAATTGTGTGGAAAGAAATTTAAACGGAAAAGCTATATGGAAATTCACTATCGCATTCATAACAATGTGCATCCATTTATTTGCGCGGTGTGTGGCAAGACTTTTGTTGTTGCTGGAGCGTTGTCTTGGCATATGAGGAGGCACGACAATACAATGCCACAATTTCCTTGCAATATTTGCGGAAAGGTTTTTACAAGACCAGGTGTACTTGCCGATCATCTGAGAATCCATTCCGGTCAAAAGCCATTCGGACCGTGCGAAGTTTGTGGCATATATTTTCGGACGAAAAAATATCTTACCGAGCACCGAAAAAGTCATCTAAACGAAGGAATAAAATTCGCTTGTGATTTATGTGGAGCTCAATTCAAAAATCAGGCTGGCGTTCGCCGTCATCAGAAACTGGTGCATTTAATGGTTCCTATGACTACGTCATCGACGCAAAAATTCGATCCTGTGTAA
- Protein Sequence
- MTNPLELGENKKSYKFGEIYCTFDGLMTIHCNYCPSKVKDFGEFSVHYMVHFDDVFVIKKEEETLFEPSVYIEEKGSEVKVNIEEVNISSFHFEDTTQPPECKRKTNPKREHHKVQSNREPSNKPTGSSVSSVAKLRTKSVGSKLSKPTERPKLTCRTCNQQFVNKTTMEKHVRSHEFGFLQTAYECDICQRQIKSKKDLLDHMRKKHAERKYACKLCNKKFKNPAYVAVHMRVHIVDPTKSQLFDEPQPCHICGKEFVSKVNYARHIKSHAFGFLPPVYDCDICGDKISNKKDLSDHMRLHAQPKYECKLCGKKFKRKSYMEIHYRIHNNVHPFICAVCGKTFVVAGALSWHMRRHDNTMPQFPCNICGKVFTRPGVLADHLRIHSGQKPFGPCEVCGIYFRTKKYLTEHRKSHLNEGIKFACDLCGAQFKNQAGVRRHQKLVHLMVPMTTSSTQKFDPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245659;
- 90% Identity
- iTF_01266175;
- 80% Identity
- iTF_01266175;