Phyg019065.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:37919219-37961284[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9 1.8e+04 -2.8 0.0 33 45 192 204 186 204 0.79 2 2 2.3e-10 4.5e-07 31.1 0.2 5 42 210 246 206 248 0.90
Sequence Information
- Coding Sequence
- ATGTATGACTGTGAACAACAGCAGCAAGAACTGGTGGAAATTGTTGACTGGtgcaaaaataacaaaatagtTATCAATGTCAAAAAGTGTGCTGTAATGTCAACCAGTCAAAGTCATTGTACGATTAGCTATGCATACCACATTGGCTATGAAGACTTGGAACGAGTTTCGGTGAAGAAGGATCTAGGAATGATACTAGATGACAAATTGATGTCGATGAACTCTGAGATCCAAGAGCTAAAAACCAGATGGAGGAATTGGTGGCGAAACGCATCTGTCGCCAACAAAGATCTAATAAGCGACCTAATGGAAAAGCTTAAGGGCATGGACTTACCCAGGCGTCGATGGCTTAGAATCAATAGATTCCGTACGGGACAGGGATGTTGTGCGTTTCTGCTGCACAGGTGGAACTACGCCCAATCTCCGCTTTGCGATTGTAATAACGAGCAAACGATGGAACACATCCTAAACCAATGCCCAACGTGTCGCTTCAACGGAGGCATGCAAGAACTTCATTTGGCAACAGACGAAGCCATAGAGTGGATCAACGGGCTAGACATCAACATGCCTCGTATTTACAAACGGAAGGATGGAGGCAACTCCTATAAGAGACACTCACCAGCGTTACTTAAGGCCGCACTTGCTGACGTTGGTAAAGGAATGACCTACCGAAAAGCGGCAAGAAAACACAAAATCAGTTATTCGGTTTTGTATCGTCACAACACAAGAAACGTGAAGAAGCAAGGAGGTCAGGCCATACTGAGCGAagtcgaagaaaacgaaTTTACTTTACCTCTATTCTTCGCCGCTGTCTCTGCCGGTGGATTAGCAGCTCCATTGATCGCAGCATCTCCATATAACTACGGACATGGATATGGACACGCTTACGGTTACTCCGCTCCATTGAGTTATGCTCACTCAGCTCCATTGTCCTATGCCCATCATGCTGCTCCTTTGGCTTACACCCATCACTCATCACCATACTCCTACGGTCATTCAGCCTACTCTCATGCTTACTCCGCTCCAATTGTTAAGGCTGTCGCTCCAGTAGCTTACGCAGCTCCAGTTGTTAAACATGTCGTCCCAGCTGCCACATCATACGCAAACACCTACAAAGTCTCACACTCACATCCAGTTGTACACCATGCCGTAGCCGCCCCAATTGTTCATGCCGCACCAGTTGTACATGCCGCTCCAGTTGTGCATGCCGCTCCAGTTGTGCATGCTGCTTCAGCTTATCACGCTCCACTCGCATACTCTGCTCCCTACTCCGCCTATCATGGTGCCTCATACCACGGTTCAGCCATCGCACACTCTGCTCCATTGGCCTACTCGCATGGTTACGGACACGGCTACATCCACTAA
- Protein Sequence
- MYDCEQQQQELVEIVDWCKNNKIVINVKKCAVMSTSQSHCTISYAYHIGYEDLERVSVKKDLGMILDDKLMSMNSEIQELKTRWRNWWRNASVANKDLISDLMEKLKGMDLPRRRWLRINRFRTGQGCCAFLLHRWNYAQSPLCDCNNEQTMEHILNQCPTCRFNGGMQELHLATDEAIEWINGLDINMPRIYKRKDGGNSYKRHSPALLKAALADVGKGMTYRKAARKHKISYSVLYRHNTRNVKKQGGQAILSEVEENEFTLPLFFAAVSAGGLAAPLIAASPYNYGHGYGHAYGYSAPLSYAHSAPLSYAHHAAPLAYTHHSSPYSYGHSAYSHAYSAPIVKAVAPVAYAAPVVKHVVPAATSYANTYKVSHSHPVVHHAVAAPIVHAAPVVHAAPVVHAAPVVHAASAYHAPLAYSAPYSAYHGASYHGSAIAHSAPLAYSHGYGHGYIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -