Phyg003719.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:42005211-42006812[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 3.3e-07 31.5 0.0 5 40 23 59 22 62 0.90
Sequence Information
- Coding Sequence
- atgtcgaaaacgaaaTCTTTGAAAGATAGCAAGAAACGGGAGTACAAAGCGTACTCGAAAGTTTTACTCAAAAAGGCCTTGAAGCGAATCCGAGAGGGAAAAATGACGATAAGCAATGCCGCCTTGCAGTATGGAATAGCCAAAGGAACGCTTTGGAACAAAGTTCATGAATCTCATAATAAAACACCTGGACGTCAATGTGAAATCACACCAGCCGAGGAAAAGTCCTTGACGGATCACATCGTGGCAGTGAGCGAATGGGGATATCCGTTCGACTACATGGACCTTCGAAAACTGTGTAAACAGATGCTTGATAGTAACAACAGGAAAACCAGATTCAAGGACAATTACCCTGGAATAAACTGGGCGAAGCGATTCGTCAACAAAAGTGATGTGTTACGCAGTCGAAAATgccaaaacataaaaacatcgaaAGCTGCGTTGAGTCCAGACACCGTTCGGGAATATTTCGATAAGTTGAAAGCGTCGCTAAAGATTGATGATGTGGAACCTATTCCTCCAGAAAATATATTAAACTATGACGAGACAAATTTAACGGATGATCCAGGAGTAAAAACATGCATTTTCAAGAGAGGCGTGAAATATCCAGAGCGAGTTAACGACTTTTCCAAGAGCAGTATGTCGCTTATGTTTTGCGGATCAGCCACAGGAGTAATGTTGCCCGTTTATGTTGTTTATAAATCGGATCATTTATGGACGACTTGGATGGAGGGTGGACCTCCAAAAGCAAGATATAATAGAAGCAAATCAGGCTGGTTCAACGCAGACATTTTCGCTGATTGGTTCGAATTCGTAATGGTTCCTCATGCCAAGAGACTAGTCGGCAGAGTCGCATTAATTGGGGATAATCTTTCGAGTCATTTTTCTGAAAGAGTCATACGTCTGGCCAGTGAAAATAATATTGCTTTCATATGTCTACCTACAAATTCAACCCACATATGTCAACCGTTGGAGGTCAGTTTCTTCGCACCGCTCAAGCGATGCTGGCGTAGGACGTTAGATGCGTGGAAAAGTGGTGTTAAGAAACGCAATCAATACATTAGCAAAGACGCTTTTCCGAAACTCCtcaaaaaattatgtgaaaaactATATGGCAGCAGCTCGGCAAATCTTGTATCAGGATTCGAAAAATGTGGCATATATCCTTTTAATCCCGACAAAGTCATCGACCGTTTGCCGAACGTAAACTCTTCAAAAAATGATGATGCCAATTCCAACGATGAGTGTGAACGTGTAAGCTCAAGTGTTTCTGGTGCAGTCATACAAATGCTGACTAACATGCGATTTGGAGGAGCAGGTGAAAAACGAAAcagacgaaaaaaaatgaacGTGGCTCCTGGTAAAAGCATTTCTTTGGACGATCTAAAATCCAACCAGTCTGAAAATGCAACAGCTCATTCCGAAAATGAGATCGACGATTCTAACGACAAACAATCTGCTGATGATTGTCAGGCTCGTACCACACAAAGGAGACGTTCAGGTCGTAATGCTAAGAAAATCGATAGCCAGTCGATAGCGACCAATAAATCGAAGAAGtgttcaaaaatacaaaatcgttCATCGAAGCGAAAGTTTCAATAG
- Protein Sequence
- MSKTKSLKDSKKREYKAYSKVLLKKALKRIREGKMTISNAALQYGIAKGTLWNKVHESHNKTPGRQCEITPAEEKSLTDHIVAVSEWGYPFDYMDLRKLCKQMLDSNNRKTRFKDNYPGINWAKRFVNKSDVLRSRKCQNIKTSKAALSPDTVREYFDKLKASLKIDDVEPIPPENILNYDETNLTDDPGVKTCIFKRGVKYPERVNDFSKSSMSLMFCGSATGVMLPVYVVYKSDHLWTTWMEGGPPKARYNRSKSGWFNADIFADWFEFVMVPHAKRLVGRVALIGDNLSSHFSERVIRLASENNIAFICLPTNSTHICQPLEVSFFAPLKRCWRRTLDAWKSGVKKRNQYISKDAFPKLLKKLCEKLYGSSSANLVSGFEKCGIYPFNPDKVIDRLPNVNSSKNDDANSNDECERVSSSVSGAVIQMLTNMRFGGAGEKRNRRKKMNVAPGKSISLDDLKSNQSENATAHSENEIDDSNDKQSADDCQARTTQRRRSGRNAKKIDSQSIATNKSKKCSKIQNRSSKRKFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265696;
- 90% Identity
- iTF_01265697;
- 80% Identity
- -