Phyg038009.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:56667318-56669258[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-11 2e-08 35.4 0.1 4 41 17 55 14 57 0.91 2 2 5.9 1.2e+04 -2.3 0.0 11 20 371 380 370 380 0.85
Sequence Information
- Coding Sequence
- ATGTTCGATTTGTCTAATTTACCGACTAACATTGACTTAAGAAAAAATGAACTTTTAAAAGCAATCCAGGAAATTCGTAAAGGAAAAATATCAATTAACAGAGCTTCAGTGGAGTATGGCATTGCGAAAGGGACGCTGatgaacaaaatcaaaaacaaacacaCCAAGGCTATAGGAAGACCGTTGGTTCTTACTAAGAATGAAGAAAGCAACATTGTCCACCATATGATTACCGTGAGCGAATGGGGTTTCCCGTTTACGAAATCTGATTTGTGCAAGTTAGTAAAAATTTATCTTGAGAAATCGAAACGCAAGGTACCACAATTCAAAGAAAACTGTCCATCGTTGGAATGGGCTGAAAGATTCATCGATCGTCACAAGCATGAGTTAACGGAAAGAgtctgccaaaatattaaactCAGCAGAGCTGGATTGACACCTGAGTCAATGAATGTTTACTTCGACAATCTGACGGCTAGTCTCACTTTACCGGATGGGTCTGTCATACTTCCTGAAAGAATTTTCAACTACGATGAGACTAACCTCAGCGACGATCCAGGAGTGAAGCGATGCATTTTTAAACGTGGTGTAAAGTATCCTGAGCGTGTGAGAGACAGCAGTAAAGCATGCACTTCGCTGATGTTCTGTGGATCCGCAGCCGGTCAAATGCTCCCGCCTTATGTTGTATACCAGGTAATGCATCTGTATGATACTTGGATGGCTGGTGGCCCATCAAATACCAGatacaacagaagcaaaagcGGTTGGTTCGATTCAATTGTGTTTACCGATTGGGTTTTGAGCATGTTCATACCATTTGTAAAGAAAGAGAAACTGAACGCAGGCGACAACAAGGTTGTGTTAATTGGAGATAATTTATCGAGCCATTTCACCGAAGAAGTTCTGACAGCCTGCCGAGAAAATAACATTCTGTTCATCTGCATACCAGCCAATTCGACACATTTGGCTCAGCCCCTTAACGTTGCATTTTACGGACCATTAAAGCGTTATTGGAGAACAATATTGGACGCGTGGAAGAAAAAATCAAACAGAAAATCTCAGGCTATTACAAAGGAATGCTTTCCGTCTTTATTAAACCAACTGTACAAACAAGTGGTCAATGGCGAAACATCAACAAATTTAATATCAGGATTTCGAAAATGTGGCATACATCCACTCGATCGTTCACAGGTTATCAGTCGACTTCCTCAGAAAGAGACTTCAGAAGAGAAGCCGTTGGAGCAAACTGTCCAGACCGTGTCCGATGCAGTCTTGGATATGTTAAAGGAGTTGCGACCATCGTCATCTACTAATCCCAGAAAGAAGCGTACCAAGGTTCAAGTCGAAGCAGGAAAAAGTATCCAGTGTGAGGACCTTGCAGGCCCAAAGCCAGCAGAGCCATCCGAAGTGGAAGTCGATGATCCAGCTTCTACTCTTGATTTGCACAATGATTCAGAAGAAAGTAACGTTGACGAAAATCTGGCCATCGACGACTGCCTTCAACCGGAAGAAAATGTGGAACCGAATCTGAATGTGGGCGACTTCGTTGTCATGAAACTCTCGTCTTTGTCTATGCAGTGGCAAAAATTTTGCAGATCAACGGAGGTGAGGTCTGTGTGCAAATGTTTACGAAAGTTCACAGCAAATTTGTTCAACTTAGAGGTCAAACTCAAATATTACCTCATCAAGTGGTAA
- Protein Sequence
- MFDLSNLPTNIDLRKNELLKAIQEIRKGKISINRASVEYGIAKGTLMNKIKNKHTKAIGRPLVLTKNEESNIVHHMITVSEWGFPFTKSDLCKLVKIYLEKSKRKVPQFKENCPSLEWAERFIDRHKHELTERVCQNIKLSRAGLTPESMNVYFDNLTASLTLPDGSVILPERIFNYDETNLSDDPGVKRCIFKRGVKYPERVRDSSKACTSLMFCGSAAGQMLPPYVVYQVMHLYDTWMAGGPSNTRYNRSKSGWFDSIVFTDWVLSMFIPFVKKEKLNAGDNKVVLIGDNLSSHFTEEVLTACRENNILFICIPANSTHLAQPLNVAFYGPLKRYWRTILDAWKKKSNRKSQAITKECFPSLLNQLYKQVVNGETSTNLISGFRKCGIHPLDRSQVISRLPQKETSEEKPLEQTVQTVSDAVLDMLKELRPSSSTNPRKKRTKVQVEAGKSIQCEDLAGPKPAEPSEVEVDDPASTLDLHNDSEESNVDENLAIDDCLQPEENVEPNLNVGDFVVMKLSSLSMQWQKFCRSTEVRSVCKCLRKFTANLFNLEVKLKYYLIKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265691;
- 90% Identity
- iTF_01265691;
- 80% Identity
- -