Phyg043997.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- br
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:119386381-119387517[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-12 2.3e-09 38.4 0.0 2 42 275 316 274 318 0.93
Sequence Information
- Coding Sequence
- atggATGAGGatttgtgcatgacttggaacAATCATCATTCGTATATCAAATCAGCATTTACGTCGTTTTTGCATAAAGAAGCACTGGTTGACGTTACACTAGCTGCTGAAGGACGATATTTGCATGTCCACAAAGTGGTTTTGTCGGCGTGTAGCTCATATTTTGCGTCACTTTTTGCTTCAAATCCGTGTCAGCATCCAATTGTGATACTGAAAGACGTTCAATACGATGACTTGAAAGCAGTTGTCGATTTCATATACTATGGCCAAGTGAATTTATCTGAAGCGAAGTTGGAGCAATTTATGAAAACGGCAAAAATGCTGGAAATCTTAGAACTTATGGCCGATTCTAGCCTATTGTCAAACAATACCAATGAATCATTTTGTCTTGGCGATTTATTTACACCAAATATCTTGCAAGAGTCAACGAGGAGTAGCCCTGAGCCTCAACAGCAGTCTCACCAACAACCACATCGACAGCAAAAACGTGTACCGTCTGCACCGAGACTCCCATGTCCAAAACGATTACGACAACCATCAACTGATTCCGAGTATTCATTGACACAAGAAAACAGTAGCATTATGGAACCGCCGTATACGTTCGAATCAGAATTGCAACCCACTTTATCCACAGAAAAATCGCAGGAAATAACTGATGAGCTGCTTCAATCCATGGCTAATACCGATATTAACTCGAATATTCCAACTCAACCATTGGATGAGAGTTTGAAAGTTTATTTGTCCCAATCCGAAATGACAGACTTTAACGAAACGTCGACTGGTGGAACAcaatttctaccgaaaccaCACCCACTAGAAGatgatgaaaattttaatctTGCGATAGAAGCAATACGATTCGACGGAATGGAATTTGATGAAGCAGCTAAAATATACGATGTGAATCGACAAACACTGTGGAAGGAGTATAACAGACGTGGCTACCCGATACTTATACAACATTGGGACTCGCAGAAAAATCAGATTGTTCCTCGAACATCAACGCCTATCAACGAACAGAACACCTCCACAGAAACTTGTGAACGCGGCTCTCGATCATCGTCGAAGAATACAATTCCAAAACCGATTTTCAGTCTAATTGTAAAAAAACCAAGAAATGcatcaaaaattgaataa
- Protein Sequence
- MDEDLCMTWNNHHSYIKSAFTSFLHKEALVDVTLAAEGRYLHVHKVVLSACSSYFASLFASNPCQHPIVILKDVQYDDLKAVVDFIYYGQVNLSEAKLEQFMKTAKMLEILELMADSSLLSNNTNESFCLGDLFTPNILQESTRSSPEPQQQSHQQPHRQQKRVPSAPRLPCPKRLRQPSTDSEYSLTQENSSIMEPPYTFESELQPTLSTEKSQEITDELLQSMANTDINSNIPTQPLDESLKVYLSQSEMTDFNETSTGGTQFLPKPHPLEDDENFNLAIEAIRFDGMEFDEAAKIYDVNRQTLWKEYNRRGYPILIQHWDSQKNQIVPRTSTPINEQNTSTETCERGSRSSSKNTIPKPIFSLIVKKPRNASKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265938;
- 90% Identity
- iTF_01265938;
- 80% Identity
- iTF_01265938;