Phyg029352.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:151192433-151193838[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0014 2.7 9.4 0.0 25 35 274 285 256 294 0.85 2 4 2.4e-10 4.8e-07 31.0 0.0 3 38 302 337 300 344 0.87 3 4 0.0058 11 7.4 0.0 8 35 355 381 353 388 0.76 4 4 1.4e-10 2.7e-07 31.8 0.0 4 43 410 448 408 449 0.94
Sequence Information
- Coding Sequence
- atggaatattATCAAGAAATAAAATGGCATGAACATGCCCAACACTTGatgaacacacagaaaaacatTTATCTCACTTCTGCGCACTCGGATGCAATAATTTGTTGTGGTGATAAACGGGCTAAAGTACATCGTCTGGTGTTAATTTTGTCCAGCGACTTTTTCTGCGACATATTCAAAGAATATCCGATCACAGACACGGCTATAATCATCATACCAGAGTTGAATCCATTAATCGTCGATCCATTGATTACCTTTATGTATACTGGACAGTTGTTTCTCGATGCCGAGTTGGTTTGTGAATTCGTGCACGCCTGCAAGTTTCTCAAACTGAAAGGAATGATTTCGTACTCGCGACTGAACCATCAAGATTCAGAAATGGAATATTCACTAGACGATCCTCCAAGCAAGGAGCAATTCGATAAACTCAATTCGTTTGAAGAGCAAGTTGTGATGCATGAGGAGTACATTGTCGACAATGTTCATCAAACAGATAATGCGGTCGAGGAGGAACAATTTGTTGAATCATTAATAACAATCGAGTCACTGCCGGATGATGAACAATCTCAAACAGTAGAATACGAACCAGTTGAAATAGCCAAATACGAAATAGAAAATGAATCTTGCGAGGAATTCGAAGAGTACGAACAAGTTGACGAATTTGGCATTGGCCTGAATCCGGAGAACACGGAAGTGCCACCAGACCGAAGTGAAGATGGAAATAAAAAACCATTTACACGGAAATATTATTCAGAGTCGGCGCTTCTCGATGCATTCAACGATTTGGCTAATGGCGCTACCATAACAGACACTAGTCTCAAGTATAACATTCCTCGTTCCACGCTGTATTGCAAAATTCGCTCCAACACCAAATATTCGTATCTCTATCGCACTATACGCGAGTCAGCTATTCAAGAAGCTACAAATGCTGTAGTTTACAACAAATTAAGTCTGCAACAAGCCGCTAGTCAATTCGGCATTGCCAAAACGGTATTATGGCGAAAGTTGCGGAATTGCAGCGAATACAAACCCGAAGACAAAAGTCACGCACATCGTGAACAAGCCATTAAAGCTATTGAGGGAGGCGAGAAATTACTGAGTGTGTCTAAAATGTACAATATTCCCATATCCACACTCCATCGCGACAAAGTGAAATTGATGGAGAAGGGAAAATTGCCGAAACACTGTTCTGTTGTGAAGCGCGAATTGGGACCTGAGTTTAGGAAACGGATTGAAGCTGCCATGGAATCGTGCCGGAACGGCATGACACAAAAAATGGCGTCCGCGTTACATAATGTTCCGAAGACGACAATATGGCGATACATGAACACAAAGAATGAGAAAAGctaa
- Protein Sequence
- MEYYQEIKWHEHAQHLMNTQKNIYLTSAHSDAIICCGDKRAKVHRLVLILSSDFFCDIFKEYPITDTAIIIIPELNPLIVDPLITFMYTGQLFLDAELVCEFVHACKFLKLKGMISYSRLNHQDSEMEYSLDDPPSKEQFDKLNSFEEQVVMHEEYIVDNVHQTDNAVEEEQFVESLITIESLPDDEQSQTVEYEPVEIAKYEIENESCEEFEEYEQVDEFGIGLNPENTEVPPDRSEDGNKKPFTRKYYSESALLDAFNDLANGATITDTSLKYNIPRSTLYCKIRSNTKYSYLYRTIRESAIQEATNAVVYNKLSLQQAASQFGIAKTVLWRKLRNCSEYKPEDKSHAHREQAIKAIEGGEKLLSVSKMYNIPISTLHRDKVKLMEKGKLPKHCSVVKRELGPEFRKRIEAAMESCRNGMTQKMASALHNVPKTTIWRYMNTKNEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266025;
- 90% Identity
- iTF_01266025;
- 80% Identity
- iTF_01266025;