Ppra064369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudoips prasinana
Gene Symbol
-
Assembly
GCA_951640165.1
Location
OX621264.1:14619544-14647805[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.0013 0.21 14.1 2.0 3 23 248 269 235 270 0.94
2 7 1 1.7e+02 5.0 0.1 3 23 292 313 290 313 0.93
3 7 0.00022 0.035 16.5 0.6 2 23 336 357 335 357 0.97
4 7 0.0068 1.1 11.8 0.2 1 23 729 752 729 752 0.94
5 7 0.00011 0.019 17.4 1.3 1 23 788 811 788 811 0.97
6 7 0.081 13 8.4 3.1 1 23 817 839 817 839 0.93
7 7 2.7e-06 0.00043 22.5 1.4 1 23 845 867 845 867 0.99

Sequence Information

Coding Sequence
ATGAATGTTACCAAGGGGAGCAAAGGCCTGGTCTTTGACTCTGGACTGTGCAGATGTTGTGGCGATATGAAGAAATGTCGTGTTTTGAACTTTGAATACGAAACTTTGGGACAGAAAGAAATATATTCGGACATGATAATGGACTGTTTCAGTTTGGTGTTATCTCACCTGGATGGAACTCTGACTGAGCGTCTGATTTGTGCCACCTGCGTGACTCGGGTACGAGATGCCCTCGCTTTCCGGAGACAGGTCCTCAGGTGTGAGGAGGCATTCCTACAGATGAAGATATATGATGATAAGAGTGATGAACTGGACACGACCATCGTGGATACGTTAGTGGAACGCCCTCCGAAGGTTGAAATAGAAATTATAAAGGCGGAGCCCCCGGACATTGAGGTGAATGATGAAATGTCTCACTGCGACTACGCTGCGGCTGATGCACTAGATGATATGAAATCTGATCAAATGGACGACTCTGCTGATGATTTGCCGTTACAACGCCACGTCGATCAGATGAAACAGACGGCGACAAAGCCAGTACCCAGACCTGTCAGGACCGACGTCAAAAGACCCCCCCAGTCTTTAACATCACAGATTTTGATGAGACAAAAGTTATCAATGTCGCGAGTGCAACAGCTAATGAGGGAAAGAGACCCCACTTACATGACAGAGACAAACATACTCACTATAGTAGAATTTTCGTACGTCTGTCCCTTTAAATGTCGTCATAATCATTTGCTATGTTACTACTGCGGCCAATTATTCTCGGACCCCTCCCAGCTCCGCGACCACACTATATCTGCCCACCAtccaaaaaaattcaaaataacgGAACATAAGAACATGATTAAAATCGATTTGTTTCGAATCGATTGTCGATTATGTCCGATGAAAATCGATAATCTTGAGGAGTTTAAGAAGCATATAGTCATGGAGCATAAAAAGAAGTATTACCCGAAATGTAAGGATTCAGTGTTGCCATTTATATTGATGAAGAATGAATCGAAGTGTGCTATTTGTGGGCagatatttccttattttcatGCCTTGAATAAGCATATGAATGAACATTTTAGTAATTATGTTTGTGAGACTTGTGGATTGGTGGACAGAAAAAGTTTAAACgaatgtaagaaaataaaacagaaagAAGAACGCCATGAGAAATTGCGCCAGCGTGAAAACAAACATATCTCGGCTTTAACAGAAAAGTGCTCTTTTTCTGCATTATCATTTCTTTCATCGTCGTCGTCAGCCGCCACCAGTATAGAAGAAACTTCATCTGACTCCGAATGCATATCACAATTGTCAGAAATGCAACCACCTCAGAAACGAGCTCGAAAAGACATTATTAACAGCCAATTATCTTCCAGTCTTGATGTCTCTAAATTGAGTGACAGACAAGCGACTAGGGTCGTGATATCTACTTTAAAAAGTGCAGGCTGTGATCCATCAGAATTTAATGTCAATAGATCTTCTATTCGTCGACAGCATATGAAAAATCGCAAAGCTGTTGCGGAGTCTCTCAAACACGAGTTTAAACCCAATTCGTCATTGACAATCCATTGGGACGGTAAACTGATAGAAGACATTACGGGGCATGAAACTGTAGATCGGCTGCCAATCTTGGTATCAGGACATGGAGTTGATCAACTGCTTGCAGTTCCAAAATTGGAACGTGGAACGAGCGAAGCATGTGCGTCAGCTGTCTACGAAGCTATAATTTCATGGAATTTGAGCCATCAGGTAAAATGTTTGTGCTTTGACACTACTGCTGTAAATACCGGCTTAAGAAGTGGAGTATGCGTTCTTTTGGAGCGAAAAATGGATAAAAATATGCTTTGGTTTGTTTGTCGTCACCACATAATGGAAATTATGTTGTCAGCTGTAGTAGATCACTTGCTTGCCCCATCTAGTGGTCCtgatatacaattatttaaaagatttaaGAACAATTGGAACTGCATGGACCAAAGCGACTTCAAAACAATAACAGATGACCCTGAGGCAAGAATTCTTGCAGAAGTGGCCGCAGACAGGATTTCTTTTGCCAAAAAGCAACTACAAGTACATCAACCTCGAGATGACTACAGAGAACTGTTGAATCTCACTATCATTTTCTTAGGAGGTTTTGTGGACAAGGGTCGGTTCGTAATGCATCAGTTACGGCACGAGGAGGGGGACTTCCCATGCGCCACGTGCGGAAAAGTCTTCAAGGCACAATACAATAGGGACCTGCATATAGATAGGGTGCACAGAAAGAAGGGGCGCGTCTACTGTCCCAAATGCGATGTCAAACTTATGTCTTACCCCCAAAAGCTGAAACATCTTGTTGAGGTCCACGGTGAAGAGCCTCTAAGCTTTCCCTGCACTAACTGTGAGCGAGTCTTCGAGACACGACGGACTCTCACCATACACAAGCGGAAGGAACATCTAAAAGACTATAGATACGAGTGTCAGTGTTGTGGACAAAAGTTCTTCACACGCTTCGCTCTCAACAACCACATGCCGACACATACGGGCGAACGCAACTTCAAATGTAAAGTCTGTGAGAAGTCTTATCCGAGACTGAAGACTCTGAAAGACCATATGAGAATACACACCAATGATAGGCGCTATAGATGTCATTCAGTAACACTCGCTGTGCATCGCGACCAGAACATTGCACCGCCATCACCGCCATACTTGGAATCATTACAAGCTGAAGACAGTGACAGTGATGTTGAAGAGGTATCTCAACCTGACGCTGAATTTGAGCCAAGTACAAGTGGAACACAATTATTTTCACAATTAGAACTGAACGACTTAACGAGAGATCTAAACCTTCCAAAAGACGCAGCTGAGCTCCTCGGATCAAGACTATCGGAAAAGAATATGCTTGCTCCTGGCACTTCATTTTCTTGGTATCGCAACAGAGAAAAATGA
Protein Sequence
MNVTKGSKGLVFDSGLCRCCGDMKKCRVLNFEYETLGQKEIYSDMIMDCFSLVLSHLDGTLTERLICATCVTRVRDALAFRRQVLRCEEAFLQMKIYDDKSDELDTTIVDTLVERPPKVEIEIIKAEPPDIEVNDEMSHCDYAAADALDDMKSDQMDDSADDLPLQRHVDQMKQTATKPVPRPVRTDVKRPPQSLTSQILMRQKLSMSRVQQLMRERDPTYMTETNILTIVEFSYVCPFKCRHNHLLCYYCGQLFSDPSQLRDHTISAHHPKKFKITEHKNMIKIDLFRIDCRLCPMKIDNLEEFKKHIVMEHKKKYYPKCKDSVLPFILMKNESKCAICGQIFPYFHALNKHMNEHFSNYVCETCGLVDRKSLNECKKIKQKEERHEKLRQRENKHISALTEKCSFSALSFLSSSSSAATSIEETSSDSECISQLSEMQPPQKRARKDIINSQLSSSLDVSKLSDRQATRVVISTLKSAGCDPSEFNVNRSSIRRQHMKNRKAVAESLKHEFKPNSSLTIHWDGKLIEDITGHETVDRLPILVSGHGVDQLLAVPKLERGTSEACASAVYEAIISWNLSHQVKCLCFDTTAVNTGLRSGVCVLLERKMDKNMLWFVCRHHIMEIMLSAVVDHLLAPSSGPDIQLFKRFKNNWNCMDQSDFKTITDDPEARILAEVAADRISFAKKQLQVHQPRDDYRELLNLTIIFLGGFVDKGRFVMHQLRHEEGDFPCATCGKVFKAQYNRDLHIDRVHRKKGRVYCPKCDVKLMSYPQKLKHLVEVHGEEPLSFPCTNCERVFETRRTLTIHKRKEHLKDYRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKSYPRLKTLKDHMRIHTNDRRYRCHSVTLAVHRDQNIAPPSPPYLESLQAEDSDSDVEEVSQPDAEFEPSTSGTQLFSQLELNDLTRDLNLPKDAAELLGSRLSEKNMLAPGTSFSWYRNREK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-