Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621258.1:2664649-2671908[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0016 0.26 13.8 1.9 1 23 46 69 46 69 0.91

2 10 8.3e-05 0.013 17.8 3.3 1 23 344 366 344 366 0.98

3 10 0.0044 0.71 12.4 1.3 2 23 372 394 371 394 0.97

4 10 0.00012 0.02 17.3 3.3 2 23 403 424 402 424 0.96

5 10 0.00077 0.13 14.8 3.4 2 23 428 449 427 449 0.97

6 10 0.3 49 6.6 3.9 2 23 463 485 462 485 0.96

7 10 0.0031 0.5 12.9 6.6 1 23 491 513 491 513 0.97

8 10 1.1 1.8e+02 4.9 5.1 2 23 520 541 520 541 0.98

9 10 0.0006 0.097 15.1 0.6 1 23 547 570 547 570 0.97

10 10 0.00011 0.017 17.5 1.8 1 23 574 597 574 597 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0016	0.26	13.8	1.9	1	23	46	69	46	69	0.91
2	10	8.3e-05	0.013	17.8	3.3	1	23	344	366	344	366	0.98
3	10	0.0044	0.71	12.4	1.3	2	23	372	394	371	394	0.97
4	10	0.00012	0.02	17.3	3.3	2	23	403	424	402	424	0.96
5	10	0.00077	0.13	14.8	3.4	2	23	428	449	427	449	0.97
6	10	0.3	49	6.6	3.9	2	23	463	485	462	485	0.96
7	10	0.0031	0.5	12.9	6.6	1	23	491	513	491	513	0.97
8	10	1.1	1.8e+02	4.9	5.1	2	23	520	541	520	541	0.98
9	10	0.0006	0.097	15.1	0.6	1	23	547	570	547	570	0.97
10	10	0.00011	0.017	17.5	1.8	1	23	574	597	574	597	0.97

Sequence Information

Coding Sequence: ATGATTAACACACAATCTGAATCATACACAAAAGAACCAGAACTGAATCCCCTAGAATGCAAGAAGTGTTGCCAGATGCTACCATCTATTGAATCATTATACAACCATGAGAAAATACATCCGAAAACAATGTGGTATCATTGCCGTATGTGTGGTAAATCATTCCCTAAgatcaacttattaaaaaagcatAATCTTCAAGTACATGTACGAGGTAAAGAGCCGAAGTCCGTGATTGATACAAAGTTTACGTGTAAAGAATGTTTAAATGTTGCGGATAATTATATACAGCATTTGCAGCACATAGAAAAGCATAAGTTCAGCTCTTTAATGACAAATATTATGGAAAAACGGATTCATAAGTTATGTGCAGTTTGTTTGAACGATAGCACTAAGATGGTAGACTTGGATGACATGGTGGCCTTACATGGAGGGCATGAAGATTTGATGGGAGATAAGACTTTGTACAATGTGTTAGCTGCTACATTGCCTAATATGAATTATCTACACAACTTTATTGGGTCAAAAATATGCGAAAAATGCCTTAACCACGCCATCACATCCTACATATTCCTACACCAATTCAATTTTAGCAGGGAACGGTTAGATATATGTGTCAGTTTCATGTTAAATCGCCTAAAAAATATTGAACCAACAGCCAATGTTTTCATCCAAATAGAACCAAGTACAATAATGTCACAATACGAAGAGGTTGATGAAAATTTACTTATTGAAGAAACAGAAAACATTGatgagagtaaaataaaaatagatgtaTTAGAAGACGAATATAGACTTAAGTCTGACTCTGAAACTGATACTGAAGTCAACAAACCCAATAGCATTCCGATGAGAAACAATGAACCTTTAGACAACATAGATGAAATTTTAGATAACTTTGTAAAGAAGCCTATTAAAACGTATAGCCGTAAACTAGTTAATGGCATCCAAAGTTCAAGTTACCCAGTAGATGTCTGCAGCGAATTCCTaacgtttaaaaagaaaaaagttaaacggACTTGGTCTAAATTTACATGTCCTTTGTGCAACAAACATTTCATATcagattatttcttaaaaagacaTATTTTGAAACATGTCAACaaaaatgtcaaatgtgatATGTGCAATAGTGAGTTTAAATCCAAATTCTATCTATATGAACACAGAAAAATGATACATTTACTTAATCAAAGTAGTTATATTTCGTGTAAATTGTGTGGAAGGACTTTTACAGacgaaaagaaattaaaaacacaTGAAAGACATCATAGGACGAAAACATGTCAGCTTTGTAACAAGATATACGCATCACAGAAACATTACAACACCCACATTCAAAGGCATGGAGTGAAGTTAAAACTACTAAAGCAGAAAAGAATGCAAACGTGTAGTTTTTGCGAAAAAGAATGCTCCAACGATAATGAACTCTGTCTTCATGTCAATAAAATCCATTTACAAATAAAGCCTTATTGTTGTGATATGTGTGACCAGCAATTTTATACAGAACACAATCTGAAGAATCATAAGAAGCTGCATAGTATGCGTTCTGAAGAAAAGTGCgagttttgtaataaaaaactaaaatgtagAAAACAGTTAGTGATTCATGTGAGGAAGCATATGGGTGTAAAACCATTTTCCTGTCCAATATGTGATCAATCTTTCTATTCAGCGTTTAAATCCAGAGAGCATATGAGAATATTGCATGGTGGCTGGTTCTATTGTAAAATTTGTAAATCTACTTTTGTTACCAAATATGGACTTAAAGAGCATCTTAATAAAGAACATAGTTACATTTAG
Protein Sequence: MINTQSESYTKEPELNPLECKKCCQMLPSIESLYNHEKIHPKTMWYHCRMCGKSFPKINLLKKHNLQVHVRGKEPKSVIDTKFTCKECLNVADNYIQHLQHIEKHKFSSLMTNIMEKRIHKLCAVCLNDSTKMVDLDDMVALHGGHEDLMGDKTLYNVLAATLPNMNYLHNFIGSKICEKCLNHAITSYIFLHQFNFSRERLDICVSFMLNRLKNIEPTANVFIQIEPSTIMSQYEEVDENLLIEETENIDESKIKIDVLEDEYRLKSDSETDTEVNKPNSIPMRNNEPLDNIDEILDNFVKKPIKTYSRKLVNGIQSSSYPVDVCSEFLTFKKKKVKRTWSKFTCPLCNKHFISDYFLKRHILKHVNKNVKCDMCNSEFKSKFYLYEHRKMIHLLNQSSYISCKLCGRTFTDEKKLKTHERHHRTKTCQLCNKIYASQKHYNTHIQRHGVKLKLLKQKRMQTCSFCEKECSNDNELCLHVNKIHLQIKPYCCDMCDQQFYTEHNLKNHKKLHSMRSEEKCEFCNKKLKCRKQLVIHVRKHMGVKPFSCPICDQSFYSAFKSREHMRILHGGWFYCKICKSTFVTKYGLKEHLNKEHSYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -