Basic Information

Insect: Pseudoips prasinana
Gene Symbol: RGM1
Assembly: GCA_951640165.1
Location: OX621236.1:36354950-36356446[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0022 0.35 13.4 2.1 2 23 153 175 152 175 0.95

2 10 0.0024 0.4 13.2 1.1 2 21 181 200 180 201 0.93

3 10 2.4e-05 0.0038 19.5 0.4 1 23 251 273 251 273 0.98

4 10 0.0095 1.5 11.3 0.8 3 23 282 302 280 302 0.94

5 10 0.00029 0.047 16.1 3.2 1 23 307 329 307 329 0.99

6 10 0.00039 0.064 15.7 3.3 1 23 335 358 335 358 0.97

7 10 0.082 13 8.4 3.4 1 23 366 388 366 388 0.97

8 10 0.0011 0.17 14.3 0.3 1 23 393 415 393 415 0.98

9 10 0.087 14 8.3 6.1 1 23 420 443 420 443 0.91

10 10 0.14 22 7.7 1.2 1 23 461 484 461 484 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0022	0.35	13.4	2.1	2	23	153	175	152	175	0.95
2	10	0.0024	0.4	13.2	1.1	2	21	181	200	180	201	0.93
3	10	2.4e-05	0.0038	19.5	0.4	1	23	251	273	251	273	0.98
4	10	0.0095	1.5	11.3	0.8	3	23	282	302	280	302	0.94
5	10	0.00029	0.047	16.1	3.2	1	23	307	329	307	329	0.99
6	10	0.00039	0.064	15.7	3.3	1	23	335	358	335	358	0.97
7	10	0.082	13	8.4	3.4	1	23	366	388	366	388	0.97
8	10	0.0011	0.17	14.3	0.3	1	23	393	415	393	415	0.98
9	10	0.087	14	8.3	6.1	1	23	420	443	420	443	0.91
10	10	0.14	22	7.7	1.2	1	23	461	484	461	484	0.94

Sequence Information

Coding Sequence: ATGTATGGAGTTGGCAACTGTCGTGTTTGTTTACAAGATACAAGTTTAGACAAATGTTTTTCGTTGTTCAAAAGCTTTGAAGATAGTACAATATCAGAGCAAATTAAGTGCGTAGCGAATGTGGAGATATCTGAAGGTGACGGGTTCCCGGACACTATATGTACTGAGTGTTTCTGGCAGCTCGGTACTGCGATAGCGTTCAAACGAAAATGTGAAGTTTCTGATAAAGTCTTGCGTTGTGTGCAATTAAATCAGATCCCGATCGAGTACAATGACAGtgactatataagtatttcttacAAAGATGAAGATGAAATATCTGTAAAGGAAGAAACCGAGACAGAAGTCGATAATGAGTTGGAAGACCACAGCACTGAATACTCTGACACCCAGCTTAAAACAGAAAATGAAATAGAAACCGTCTTCAAGAAAAGCAGAAGCATAGATCTCAAGCTGATATGTGATGACTGCCAAGGatcttttaaaagtaaatgtAAGTTGAAAGTGCACTGGAAGAAAGTACACCTTACAGAAAAGTTAACTTGTAAGATTTGCAGGAgaatatttaaaagttataaaGCTTTCAATAAACATGTGAAGCAAAAATCTATAAACTGTACAACAGCAAATGCAGCTAATATTGAAGGCCAGGGGAAGCACAGAGTGTTTCACTGTAAACAATGTTCATTTAAAACTAAACGGACAAGATTTCTTTACTACCATGTAGCTATCCACACTGGTGAAAAAACTTTTCAATGTAATATTTGCCTCAAGAAATTTGCTCAACAAGCTTCTCTCATTGTACATAAAGACACACATTctcaaattaaaattcaaataatatgtCATGTTTGTGGTAAAACTGTTAAAGGTCGACGAAACATCTACCGTCATAAATTAGCCCATAAGACTGAAAGTTATGAATgtgatatttgtaaaaaaacattaaagcaTAAACAATCTATAGTGAATCATATGAAACGTCACAGTGGAATCAAGGGTTACTCATGTGAAAAATGTTCGATATCATTCTACACTCTGTCTGAATTATGCCAGCATAAAAACAAAGTCcatattaaaacaaaagtttacaCTCATAAATGTGATTTGTGTGAGTTTGTTACATGTAGAAGAGAAGCTTTGGTGATACACAAGTCCAAACACACAGGTTCTAATTTTCCATGTTTAATCTGTGGTAACTTTTTTGATAACCCTGAAAAGTTTTCAATACACCTGAaatcacatactgaaagaaaccATGCCTGTACTTATTGTGACAAAAGGTATGCTACAAGGCATTCACGAAATGCTCATGTCCATCAGAAACATCCACTAGAAGCTAAGAAGGAGTTTACTATTGAAAATACAATTGAAAAAGAGTTTGCTTGTACCATTTGTGGTAATAGGTATTCAATAAAAGCTTCTCGTACTGCTCATGTACACAGAAAACATAAAAGTAAAGAAACAAAGAAGGTATACAAAAGAAGTAAGAAATAG
Protein Sequence: MYGVGNCRVCLQDTSLDKCFSLFKSFEDSTISEQIKCVANVEISEGDGFPDTICTECFWQLGTAIAFKRKCEVSDKVLRCVQLNQIPIEYNDSDYISISYKDEDEISVKEETETEVDNELEDHSTEYSDTQLKTENEIETVFKKSRSIDLKLICDDCQGSFKSKCKLKVHWKKVHLTEKLTCKICRRIFKSYKAFNKHVKQKSINCTTANAANIEGQGKHRVFHCKQCSFKTKRTRFLYYHVAIHTGEKTFQCNICLKKFAQQASLIVHKDTHSQIKIQIICHVCGKTVKGRRNIYRHKLAHKTESYECDICKKTLKHKQSIVNHMKRHSGIKGYSCEKCSISFYTLSELCQHKNKVHIKTKVYTHKCDLCEFVTCRREALVIHKSKHTGSNFPCLICGNFFDNPEKFSIHLKSHTERNHACTYCDKRYATRHSRNAHVHQKHPLEAKKEFTIENTIEKEFACTICGNRYSIKASRTAHVHRKHKSKETKKVYKRSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01265172;
90% Identity: iTF_01265165; iTF_01265172;
80% Identity: -