Basic Information

Insect: Pseudoips prasinana
Gene Symbol: RTase
Assembly: GCA_951640165.1
Location: OX621243.1:27924682-27942610[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00014 0.023 17.1 0.1 3 23 177 197 175 197 0.96

2 9 0.076 12 8.5 0.5 2 23 202 223 202 223 0.97

3 9 0.0012 0.19 14.2 8.8 1 23 229 252 229 252 0.97

4 9 0.0042 0.69 12.4 2.3 2 23 261 283 260 283 0.95

5 9 1.7 2.8e+02 4.2 1.7 2 15 669 682 668 689 0.81

6 9 0.00027 0.044 16.2 0.1 2 23 695 716 694 716 0.97

7 9 0.00038 0.061 15.7 0.3 1 23 722 744 722 744 0.98

8 9 8.9e-05 0.014 17.7 2.8 1 23 750 772 750 772 0.98

9 9 4.1e-05 0.0066 18.8 2.2 1 23 778 800 778 800 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00014	0.023	17.1	0.1	3	23	177	197	175	197	0.96
2	9	0.076	12	8.5	0.5	2	23	202	223	202	223	0.97
3	9	0.0012	0.19	14.2	8.8	1	23	229	252	229	252	0.97
4	9	0.0042	0.69	12.4	2.3	2	23	261	283	260	283	0.95
5	9	1.7	2.8e+02	4.2	1.7	2	15	669	682	668	689	0.81
6	9	0.00027	0.044	16.2	0.1	2	23	695	716	694	716	0.97
7	9	0.00038	0.061	15.7	0.3	1	23	722	744	722	744	0.98
8	9	8.9e-05	0.014	17.7	2.8	1	23	750	772	750	772	0.98
9	9	4.1e-05	0.0066	18.8	2.2	1	23	778	800	778	800	0.98

Sequence Information

Coding Sequence: ATGGAGATGTGTAGAGTATGTCTCTCTTCAGATAAAGAAATGCTTCCTTTGGATGAAACTTTCATCAATAATTATAACTTGTTGACCAATCTGAACATTACTTTGCTAGATGGACTGCCACAATGCTGTTGTCAGTCTTGCTCGgagacaataaaatattttgtagaaTTCAGAGAAAACTCTATTGCATCAGAAACCACTTTGCGTACTATTATTGAATCTgaTGTTAAACAAGAAAAAAGGACTCTTgttgaagaaataaataaagaatcaaATTGTGATTATGGCAATATtgtaaagaatattaaaaaagaattggaaataaaacaagaaaatgaTGATTCTGTATGTGAGGAAGTTCGTATTGATTTTGAACCATTTGATGGGGACATCAGTCAGCTTGTATCAAGTAATGATGatataaaaacaaagaagagaaaaaaatctaaaagaaaGAAACTGAAAGAAAAAGATGGTTCATCAATATTGTTAGAGAATTTAGTGGAAGAAATAGAACAAAAATGGTTTTGTGgTTTATGCCCCAAATCATTTGACGACAAGGACGACTTAGATATACACCTAAAAATACATAAGAAAGACAGGCGCTGTAAGCTATGTAAAGAAGATGCCAACAGCTACTCTCAGCTCCTGGCGCATCGGCTAATGCATGTGCCTATAAGACAGTATAAATGCCATATTTGTAGCAAAAGATTCAAATCCTGCATATATCTAGAACATCATTATAGAAATGTGCACATTAAAACAGATGATCCTGTATTAACATGCAAGTATTGTGCCCGAAAATGCAAAACTCCGAAAAAATTAGCAGCTCATAGACGTGAGGTCCACGCTCAGGATAGATTCTTCTGCGACATTTGTGCCAAAGGTTCCATCCCAGCTAGTTGGAAATCCCAACTTATTATCCCACTCTTAAAGCCAGGTAAATCCTCAGATAATCCTGATCACTTCCGCCCTATCGCCCTATCTCCTGTGATTGCCAAAATCCTGGAACATTTGTTAAAAAATCGCATAGAATGGTTTATGGAAAGCAGAGGACTATTAGCAGAATCCCAATATGGATTCCGTAAAGGCTTCAGCACTATGGACAGTTTGGGCACACTACTTACAGACACTCGTATTGCATTCAGCAAGAATGAGTCAGTAGTTGCAGTCTTTCTAGACATATCTTCTGCATATGACAGTGTCAATCTTTCCATACTCAGGAGTAAGTTACGCAAGTTGAGTATGCCGTTAAGAATCTTACACTGTGTCTGTAATCTCTTGTCTGAACGAACTGTGAAGCTAAATGTCCCAGGAGATTCAAATGATCTCAGAACAGTCTGGCGAGGCCTCCCACAGGGTTCTGTTCTTAGCCCACTGCTGTATAGCATTTATACGTCGGATTTACATTTGTCCCTCAACAGAAACTGCCAAATTCTGCAGTATGCTGACGATTTATGCCTATATGTCCCTGATTTGCATATAGCAGCTGCGGCGGAATCTATTCAGGTGTCCCTCGACTCATTAAACCAATGGCTTGTCTCACATGGTCTTAAGCTGTCAGCTCCGAAAAGCTGCGCATTGGTTTTCACTCGAAAGAGATCATTACCAGATGTTTACCTTGAGATTGAAGGATCCCCAATCAAGATAGAAGAAAAAGGTAAATTCCTTGGTATCATCTTGGACTCCAAATTAACAGGTGTCGCTCatattaactatataaataataagtgcGACAAAAACGTAAATATGTTGCGACTCTTTCGGGTGTTTGGTGGGGAGCTCATCCATTTAGGTGTTTGGTGGGGAGCTCATCCATTTAGTTTAAAACTCATATACAATGCCACGATAAGGATACCACGTATATTAGATGATGGTTCTTTCTCTCTTGAGCCCGACACCATTCAATCAAAGTCCCTACGCATTGTATTGGGTTGCATGAAATCTACTCCAACAAATGCTTTGCAGgaTCACACTATACGGAAGCATGTTCTAGAAAAGGTATACTGTAAAAACTGCAACCGTCCATTCGTCGATCAAGAGACCCATGATAAGCATGCATGTACTGAAAAGAAATGTATCGTCTGCCCCGTGTGTGGAGAATCATTGAATGGAAATGCCAGATTAAATAGACATATGAAAAAGCACAGTGATGTCTGCCAATACGAGTGCACACGGTGTCCGGCTAAGTTCAAGACGAAAGGTGCACTGATCGTGCACAACAACCGGCACGATGGAAATCGCACGCACCAGTGTCAATACTGTCCGGCCAAGTTCTACTCGGCTAGCGTTTTGACCAAGCATCGGAGGACACATACCGGTGAAAAACCATATGTATGTCATATATGCACGAGAGGTTTCACAGGCGGACACAATCTCAAAGTACACATGAAAGTACACGGAGAGTACTTAGTTGCCAAGAAATATACCGAACCAGAGATCACCATTACTACCAACTGA
Protein Sequence: MEMCRVCLSSDKEMLPLDETFINNYNLLTNLNITLLDGLPQCCCQSCSETIKYFVEFRENSIASETTLRTIIESDVKQEKRTLVEEINKESNCDYGNIVKNIKKELEIKQENDDSVCEEVRIDFEPFDGDISQLVSSNDDIKTKKRKKSKRKKLKEKDGSSILLENLVEEIEQKWFCGLCPKSFDDKDDLDIHLKIHKKDRRCKLCKEDANSYSQLLAHRLMHVPIRQYKCHICSKRFKSCIYLEHHYRNVHIKTDDPVLTCKYCARKCKTPKKLAAHRREVHAQDRFFCDICAKGSIPASWKSQLIIPLLKPGKSSDNPDHFRPIALSPVIAKILEHLLKNRIEWFMESRGLLAESQYGFRKGFSTMDSLGTLLTDTRIAFSKNESVVAVFLDISSAYDSVNLSILRSKLRKLSMPLRILHCVCNLLSERTVKLNVPGDSNDLRTVWRGLPQGSVLSPLLYSIYTSDLHLSLNRNCQILQYADDLCLYVPDLHIAAAAESIQVSLDSLNQWLVSHGLKLSAPKSCALVFTRKRSLPDVYLEIEGSPIKIEEKGKFLGIILDSKLTGVAHINYINNKCDKNVNMLRLFRVFGGELIHLGVWWGAHPFSLKLIYNATIRIPRILDDGSFSLEPDTIQSKSLRIVLGCMKSTPTNALQDHTIRKHVLEKVYCKNCNRPFVDQETHDKHACTEKKCIVCPVCGESLNGNARLNRHMKKHSDVCQYECTRCPAKFKTKGALIVHNNRHDGNRTHQCQYCPAKFYSASVLTKHRRTHTGEKPYVCHICTRGFTGGHNLKVHMKVHGEYLVAKKYTEPEITITTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -