Ppra058175.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- Hivep3
- Assembly
- GCA_951640165.1
- Location
- OX621261.1:13596513-13615529[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.084 14 8.4 1.1 1 23 204 227 204 227 0.97 2 11 0.022 3.6 10.2 2.6 1 23 234 256 234 256 0.98 3 11 0.87 1.4e+02 5.2 0.4 2 23 261 283 260 283 0.85 4 11 0.0062 1 11.9 1.1 1 23 294 316 294 316 0.98 5 11 0.00016 0.025 17.0 0.6 2 23 322 344 321 344 0.95 6 11 0.022 3.5 10.2 0.1 1 23 351 374 351 374 0.97 7 11 0.0096 1.6 11.3 2.0 3 23 383 403 382 403 0.97 8 11 1.4e-05 0.0023 20.2 0.2 1 23 414 437 414 437 0.95 9 11 9.4e-05 0.015 17.7 2.9 1 23 443 466 443 466 0.94 10 11 5.3e-06 0.00085 21.6 0.3 3 23 477 497 476 497 0.98 11 11 0.0033 0.53 12.8 1.3 2 23 504 526 503 526 0.92
Sequence Information
- Coding Sequence
- ATGGCCTCATTTTCACGTTCCAATATTAACGAATAtgaatttttaatgaaaaataagaaCGTCTGCATCTGTTGCACGTCTAAAAATGAGTCATTAGTGAGCATTTCAACATGTAAACATTCGGATTTTCTCGTGAAGAATGTAAAATTTAAGTTCAACTTCAAGAACTCGTTCGTCTGCGTGACGTGCCACACGATGCTGAAGAAGATCGAGGCCTTCAAGCAGCAAGTAGAAGACAGCATCCAGATGCTTTACGATCAAACACACCAACTCAAAATTAACAAGTTATTCGACTTCAAGATCAAAATGATTACAACTGATAGCTCTATTCTGGATCCACCAGCAGACTACGAAGTCAAAGACGAAACATCAACTGAGCTCCCGACTTTAGAAACCGAAGTCAAAATAGAACACGAATCCCTCGACGACTTTCAAGATTTTTCGGATGACGAAGCCGAAATCCCTTTGTCAGCAttcaagaaaaagaaaaaaaacaaagaacagAAAATACAGTTCGACGGGAAACTGAAACATATACAGCTTAACAAAGCCCAGTTGATGGAAGAGAGGGAGCAGATGAGATTGAACGAAGGCTATTTGAAACTACCCTACAAATGTGAGGATTGTATCGTGGGGTTCGACCACGAGCTGACGTTGCAGAGTCACATGACCAAGAGACATAAGCAGAGTAAAAAGAGTCACCAATGCGATATATGCAAGTCTATATTGAGCAACAAGTTCTCTTACGATGAGCACATGCGGCGACATGTTAGGAgGGTTGAGTGTATGGTGTGCGGGCGCCGATACAACCACATCCAGTCTGCGATACAGCACTATGACGAGAAGCACGCGGCGCCCGGCGAGAGGATACAACCGGACTTCGTTTGCAAGGAGTGTGGGTTTACCACAGCGTCAAACCGCGTGTACCGCTATCACATGGACAAGCACAGGAACCAGGGGTGCGAGTGCAAAATATGCGGAAACACTTTTGTTAACTTGAACGGGCTGCGAGCACATCTCTACACGGTCCATAGTCAGTCCTCCCGCGTATACAAGTGTGAGCCTTGCAACAAACTGTACCGTGCCAAGTCCGGACTAGCCGCGCACGTCAAGTCCATACACGAACAAGAGCCGGGCCGCGCCTTCTGTGCTTTGTGCCGCACGCAGTACCGGAACGAGAAGACGCTCAAATATCATATGAACACACATTCTAATCACATTAGTGATAGCGATAAGAAATTTATTTGCGACGAGTGCGGCACTAAGTTCGTGAAGAAGAACGATTTGAAGGTACACATCAATTGGGAACACCTCAAGATCAACACGCATACCTGTAACAAATGTTCTAAGATATTCCGAAGTGCCACAGCACTCCGGCGTCACTACAGCTACGTGCACCTGAAGCAGAGGCCGCCCAGAGACAAGATCTGTGATTACTGCGGGCGCGGGTTCACtacCCAATCCATTCTGCAGTCGCACATCCGCACCCACACGGGCGAACGGCCCCTACAGTGCAGCCATTGCCCTGCGACCTTCGCACATTCCGCCGCtttatacacacacaataaactATTGCATAATGGACAGAAATGA
- Protein Sequence
- MASFSRSNINEYEFLMKNKNVCICCTSKNESLVSISTCKHSDFLVKNVKFKFNFKNSFVCVTCHTMLKKIEAFKQQVEDSIQMLYDQTHQLKINKLFDFKIKMITTDSSILDPPADYEVKDETSTELPTLETEVKIEHESLDDFQDFSDDEAEIPLSAFKKKKKNKEQKIQFDGKLKHIQLNKAQLMEEREQMRLNEGYLKLPYKCEDCIVGFDHELTLQSHMTKRHKQSKKSHQCDICKSILSNKFSYDEHMRRHVRRVECMVCGRRYNHIQSAIQHYDEKHAAPGERIQPDFVCKECGFTTASNRVYRYHMDKHRNQGCECKICGNTFVNLNGLRAHLYTVHSQSSRVYKCEPCNKLYRAKSGLAAHVKSIHEQEPGRAFCALCRTQYRNEKTLKYHMNTHSNHISDSDKKFICDECGTKFVKKNDLKVHINWEHLKINTHTCNKCSKIFRSATALRRHYSYVHLKQRPPRDKICDYCGRGFTTQSILQSHIRTHTGERPLQCSHCPATFAHSAALYTHNKLLHNGQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -