Ppra022798.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621244.1:7263752-7282185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.031 16.7 1.3 1 23 280 302 280 302 0.99 2 11 0.0013 0.21 14.1 2.1 2 23 310 331 309 331 0.96 3 11 0.034 5.5 9.6 0.6 1 23 362 385 362 385 0.93 4 11 0.00023 0.038 16.4 0.1 1 23 390 413 390 413 0.94 5 11 0.014 2.3 10.8 0.0 2 20 424 442 424 444 0.95 6 11 2e-05 0.0033 19.8 0.8 3 23 454 474 454 474 0.99 7 11 0.46 75 6.0 0.3 3 23 488 509 487 509 0.94 8 11 0.00013 0.02 17.2 0.9 1 23 524 546 519 546 0.98 9 11 1.4e-05 0.0023 20.2 2.1 1 23 552 575 552 575 0.96 10 11 1.9e-05 0.003 19.9 3.8 1 23 580 602 580 602 0.99 11 11 0.38 61 6.3 5.7 1 23 608 631 608 631 0.95
Sequence Information
- Coding Sequence
- ATGGAAGACTTTAAGTATTGCCGAGTGTGTTTAATAACGGATGTAAAGATGTACAACTTGGACGCTACTACGGATAATTCAGTCGGAGTTGTATATTCACAATTGGCGCAGATCCCGAAATTTCCTATTAATCAACATGTGTGCTTTGAATGTGCGAGCTTACTCAAAAAATACAAGGAGTTTAAGTCAAAATGTCTCAGAGCACATCGCATTCTCGTAAAGATTAAAGTACAGATAACAAAAGATGATCTACAAAGacatagaaaagaaaataatttagaatcTCATTTGATATTTTCCCCATTTGAACTTCTTGAATATGGTACTATAGAAAATAACATTCCAGAATTCCCCTGTGATTCAAAAGTTGATGCTAATATTAACCAAGAAAATACTTCAAAAgatgaagaaataaaagaagaaaTAGAAAGTATTATCGAAGAACACATTACTATTGAAGAAACAGAAAGTATTCATGATGATGGTGAAATACCAGATCTTGTGGCAACCTCTAGtgataatgaaaatatttttaattataatgataatagttCCATAGAAGACTTACCTAAAAGGAATTTAAGGTTAAAACGTCCAAGGCAAACAAAAGTAGGAAATGTTAAACTAACTAAAACTGATGATAATAGAAGTAAGAAGCAAagacaaaaaagaaaagtgaaaaaACCAACAGGAGATAGACTTGGGTTTAAAAGTCGAAAGAAAGAAGTAGATCTAAGTCCCTTTAATGGTTTTGCTACTGTAGTTACCTTAACTCCTGAAGAAGCAAgacaagatattattttaagaaaatactcaaataattatataaattcgcTTTTCAAATGTGATATCTGCTTTAAAGGTTTTGAAACAGAAACAGCTTTTGATAATCATATGAAAAAACATAGCCCTGAACAAGGTGATTTGGAATGTGAGATCTGTCACTTCAGGTTTGCTCGAAAGCTTACCTTGTGGAGACATAAAGAACGTCACAAAAGAAAGTTTATCTGTGATGTGTGTCCATATGTCTGTGTTGGCATTCATCAAGCAAAATGCCACGTAAATCTTCACAAAGGGAAGGTGTATATTTGTGACATCTGTGGTGATGTATTCAGAGTACATAACAGCCTAAGCATGCACAAGCAGGCGAAGCATCTAGTCTCTGAATTCATTTGCGAGCATTGTGGATATGTATTCGGCACGCCGAGAGGATTGGCTACACATGTCGCAATATTACATAGCACGGACACGAACGCCAAGCTCGGTCCGGAGTGCGAGGAGTGCGGCGTACATTTCGCTACCGAGGCGGCGTGGAAGCGACATCTGGTGCAATCTACTAAACATGGAGTCAGCAATGGATGCAAAATTTGTGGGGAAAAGTTTTCAAATTTGGATGAACTGAAGTCTCATAAGAAGGTACATTCTCGACGGCCTAAGTACCGGATGCCGCTACCCGCCGCGTGTACTATTTGCAATAAATGGCAGACGAAACGGTCGGAGTACGAAGCGCACATGATGTCAGAACATCCGCAGAGCGACGAGGCTAAGAAGCTCAGCGAGCTACAGAAGCACGTCTGCGAAGTTTGCGGACAGGTGTTTAGGATAAAAGTTCAGTTAAACTACCACCGCAACAAGCACACAGGCGAGCGACCGTACAAGTGCACGGAGTGCAACAAGTCGTTCACACACCCCAACCTGCTCTCCATACATAAGAGCTCCGCACACACCGGCGACGACTTCAAGTGCGACAGGTGTGGACGGGTGTGTACGAGTAAGAAGTCCCTCAGCTCGCATATGAAGATTCACCTAGGGATACGTCCTTACAAATGTGACAGCTGCGACAAAACGTTCTTACATCCGTGCGAGGTCAAAACCCACGTCAAGCATGCACACAACAACGTGCCATGGcctaagaaaaagaaaaaagttgaTGAAGAAACTTAG
- Protein Sequence
- MEDFKYCRVCLITDVKMYNLDATTDNSVGVVYSQLAQIPKFPINQHVCFECASLLKKYKEFKSKCLRAHRILVKIKVQITKDDLQRHRKENNLESHLIFSPFELLEYGTIENNIPEFPCDSKVDANINQENTSKDEEIKEEIESIIEEHITIEETESIHDDGEIPDLVATSSDNENIFNYNDNSSIEDLPKRNLRLKRPRQTKVGNVKLTKTDDNRSKKQRQKRKVKKPTGDRLGFKSRKKEVDLSPFNGFATVVTLTPEEARQDIILRKYSNNYINSLFKCDICFKGFETETAFDNHMKKHSPEQGDLECEICHFRFARKLTLWRHKERHKRKFICDVCPYVCVGIHQAKCHVNLHKGKVYICDICGDVFRVHNSLSMHKQAKHLVSEFICEHCGYVFGTPRGLATHVAILHSTDTNAKLGPECEECGVHFATEAAWKRHLVQSTKHGVSNGCKICGEKFSNLDELKSHKKVHSRRPKYRMPLPAACTICNKWQTKRSEYEAHMMSEHPQSDEAKKLSELQKHVCEVCGQVFRIKVQLNYHRNKHTGERPYKCTECNKSFTHPNLLSIHKSSAHTGDDFKCDRCGRVCTSKKSLSSHMKIHLGIRPYKCDSCDKTFLHPCEVKTHVKHAHNNVPWPKKKKKVDEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -