Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621238.1:11328321-11340344[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.05 8.2 9.1 4.3 1 23 507 529 507 529 0.98

2 9 0.0022 0.36 13.3 2.9 1 23 535 557 535 557 0.98

3 9 1.7e-05 0.0027 20.0 5.6 1 23 562 584 562 585 0.96

4 9 0.003 0.48 12.9 0.3 2 23 591 612 590 612 0.95

5 9 0.44 71 6.1 4.0 1 23 619 641 619 641 0.98

6 9 1.3e-06 0.0002 23.5 0.1 1 23 647 669 647 669 0.98

7 9 3.6e-06 0.00058 22.1 0.6 1 23 675 697 675 697 0.98

8 9 5.1e-06 0.00083 21.6 0.7 1 23 703 725 703 725 0.98

9 9 2e-05 0.0032 19.8 0.2 1 23 731 753 731 753 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.05	8.2	9.1	4.3	1	23	507	529	507	529	0.98
2	9	0.0022	0.36	13.3	2.9	1	23	535	557	535	557	0.98
3	9	1.7e-05	0.0027	20.0	5.6	1	23	562	584	562	585	0.96
4	9	0.003	0.48	12.9	0.3	2	23	591	612	590	612	0.95
5	9	0.44	71	6.1	4.0	1	23	619	641	619	641	0.98
6	9	1.3e-06	0.0002	23.5	0.1	1	23	647	669	647	669	0.98
7	9	3.6e-06	0.00058	22.1	0.6	1	23	675	697	675	697	0.98
8	9	5.1e-06	0.00083	21.6	0.7	1	23	703	725	703	725	0.98
9	9	2e-05	0.0032	19.8	0.2	1	23	731	753	731	753	0.99

Sequence Information

Coding Sequence: ATGGTTATAGCAGTTTATgttgatgatattcttattttttggaACGATGAGAAGGAGAGAATATTAGTAAAAAAGGAACTTGAAACTAAATTCGAGATGAAAGACCTTGGTGAAGTAGATGTCTTTCTTGGAATGAAAATCAAACGTCAAGAAAATTCAATACAACTCAACCAAACTGAGTATCTtgagaaaattttaaagaaatttgggATGAGTGAGTGCAAGAGTGTAAAGACTCCTATTGAAAGTGGGTTAAAACTTGCGAAGCCACACGATGACAAGTACATTCCACCAAATATACTGCCATACAGAGAGCTAATTGGTTCGTTGATGTATTTAGCTGTATGTTCAAGACCTGATATATCATACGCAGTTAGCTATTTAAGCCAATTTAACAGTTGTTACGATCAAACACATTGGGCAGCTGCAAAGCGTGTGCTTAGATATTTGAATGGTACCAAAGAACTCGGGCTAGTATTCAAGAAGACAGGGAATAGGCTGGTTGGTTACGTGGATGCAGATCACGCAGGTGATGTGTGTGATAGAAAATCGTACACTGGTTTTGTGTTCACACTTGGAGGTTGTCCCATAGCGTGGGAAAGTCGTAAGCAAACGACAGTAGCACTCTCTAGTGCTGAATCTGAGTACGTAGCTCTTTCGGAGGGATGCAGAGAATCAGCATTTTTAACTGCACTTCTGGGCGAGCTAACTGATAGTAATGAAGTTATAGAACTATTTAGTGATAGTCAGTCTGCGATTCAGATAGCTGAAAATCCGATACATCATCGGAGAACAAAACATATAGATGTGAGGCATCACTACATTCGAGAAATGGTGCGAATGGGTAAGTTTGTAACAGAAGCTAGACCATTGTGGGCATGTTATATGTGCTATAAATTGCTTCAGCATTGCCATGAACTAATGATAAAATGCTTACAATCTGAAGCTATTCTTCAGTTGATGATGAAAGGAAATCAGGACCAAAGCCTTATAGATAAACGACTATATAGTGTTAACAAGCTGTGCATGACCCAAGTGCTCCTTATTACTTCAAATGATACAGCTACAGTTGCCTCTTCAGTCAATACTCATATTAAAGTGGAGATACCTTGCATTGAAAATAGtatattgaaaatgaaacagGAACTCATTGATAATGAAGACAAGGAACAGTCATCACCGGAAACTGAGTATGAAATGCCTCAGCCCATTCAAACAGTTAAAAATCTGTATTCTGAGATTGAAGTGAAAGAAGAATTATCTGATAACGAAGTTTTAAATGACTTGGGTGATGAAGAAAATGATGAATCATCTACTAATGAAAACGATATTTCAAGCAAAGAACAGGAACAGACACAGTCAGACTCGGATGATAATACACCTCTTATTTCGATGAAGTCGGTAAAAAGAAGTAAACGAAAAAGAGCCCAAAAGAGTAAATCTTCAAGCAAGAAACgttCACAGCAAAAGAAAACTGGTATGAAAAGTTCCAGCGAAGTATGTAATGGCGGAAGAACATACATATGCGACTATTGTCAAAAATGTCATAAATGGAAGAGTGATTTGAGAAGACACATTCTCATCCACACTGGAGAAAtgccacacaaatgtaatatttgccAGAGCAGCTTTAGAGAGACGCGGCAACTAAATATACACGTCCGCAATCATACTGACAAGCCCCATCAATGTGAAATTTGTCAAACCAGATTCAAAGACAAATCAATGTTAGACAATCACATGCGTAAACACCATTCTGACGAACCTTTGAAATGTAACATATGTTCGAAAATCTTCGCTTCAGATAGTGCTTATTATAGACATTCTCTAATTCATAGACCTAATAAGAAACTACATAAATGCGAGTTATGTTCGTACACCACAATGTTTCTTCAATCTTTGAGAACACACTTTCGTATCCACACTGGTGAGCGGCCGTATTCATGTGAAATTTGTCAGAAGAGTTTCAGGGGACCTAGTGGTTTAGTAACACATATTCGCATCCATACTGGAGATAAACCTTATGTATGTAGCATATGTCAGAAAGGATTCGTTGACAAAGGTAAATTGAACAGACATTTTCGTATCCACACTGGTGATAAACCACACAAATGTGAAATATGTTCAAAAAGTTTCATAGAAAAAGGCGCTTTAAAGATACACCTTCGAGTTCACACTGGGGAAAAGCCATATGTTTGTGTAATTTGCTCAAGAGCTTTCCCCCAAATAAATCAACTGAAGGATCATATGCGACGACATGCTGCAGCAAAAATAACGTAG
Protein Sequence: MVIAVYVDDILIFWNDEKERILVKKELETKFEMKDLGEVDVFLGMKIKRQENSIQLNQTEYLEKILKKFGMSECKSVKTPIESGLKLAKPHDDKYIPPNILPYRELIGSLMYLAVCSRPDISYAVSYLSQFNSCYDQTHWAAAKRVLRYLNGTKELGLVFKKTGNRLVGYVDADHAGDVCDRKSYTGFVFTLGGCPIAWESRKQTTVALSSAESEYVALSEGCRESAFLTALLGELTDSNEVIELFSDSQSAIQIAENPIHHRRTKHIDVRHHYIREMVRMGKFVTEARPLWACYMCYKLLQHCHELMIKCLQSEAILQLMMKGNQDQSLIDKRLYSVNKLCMTQVLLITSNDTATVASSVNTHIKVEIPCIENSILKMKQELIDNEDKEQSSPETEYEMPQPIQTVKNLYSEIEVKEELSDNEVLNDLGDEENDESSTNENDISSKEQEQTQSDSDDNTPLISMKSVKRSKRKRAQKSKSSSKKRSQQKKTGMKSSSEVCNGGRTYICDYCQKCHKWKSDLRRHILIHTGEMPHKCNICQSSFRETRQLNIHVRNHTDKPHQCEICQTRFKDKSMLDNHMRKHHSDEPLKCNICSKIFASDSAYYRHSLIHRPNKKLHKCELCSYTTMFLQSLRTHFRIHTGERPYSCEICQKSFRGPSGLVTHIRIHTGDKPYVCSICQKGFVDKGKLNRHFRIHTGDKPHKCEICSKSFIEKGALKIHLRVHTGEKPYVCVICSRAFPQINQLKDHMRRHAAAKIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -