Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621246.1:9800775-9803945[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6e-08 9.7e-06 27.7 2.4 1 23 366 388 366 388 0.98

2 10 0.00042 0.068 15.6 1.0 1 23 394 419 394 419 0.97

3 10 0.0081 1.3 11.6 0.6 1 23 429 451 429 451 0.96

4 10 0.0016 0.26 13.8 4.5 1 23 458 480 458 480 0.98

5 10 0.024 3.9 10.1 1.6 2 23 515 537 514 537 0.93

6 10 0.018 2.9 10.5 3.2 2 23 543 562 542 562 0.97

7 10 3.8e-06 0.00062 22.0 3.5 1 23 568 590 568 590 0.98

8 10 4.7e-06 0.00076 21.7 0.8 1 23 596 618 596 618 0.98

9 10 8.5e-05 0.014 17.8 1.3 1 23 624 647 624 647 0.97

10 10 0.0038 0.61 12.6 0.2 1 22 653 674 653 674 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6e-08	9.7e-06	27.7	2.4	1	23	366	388	366	388	0.98
2	10	0.00042	0.068	15.6	1.0	1	23	394	419	394	419	0.97
3	10	0.0081	1.3	11.6	0.6	1	23	429	451	429	451	0.96
4	10	0.0016	0.26	13.8	4.5	1	23	458	480	458	480	0.98
5	10	0.024	3.9	10.1	1.6	2	23	515	537	514	537	0.93
6	10	0.018	2.9	10.5	3.2	2	23	543	562	542	562	0.97
7	10	3.8e-06	0.00062	22.0	3.5	1	23	568	590	568	590	0.98
8	10	4.7e-06	0.00076	21.7	0.8	1	23	596	618	596	618	0.98
9	10	8.5e-05	0.014	17.8	1.3	1	23	624	647	624	647	0.97
10	10	0.0038	0.61	12.6	0.2	1	22	653	674	653	674	0.95

Sequence Information

Coding Sequence: ATGGCTAACGTAAAAAGTAGATTAAAAGCACCTAAAAGTGCGTCTGTGAAGAAGGGACGTAGTAATCCAAAAGCAAAATTAACAGGTGCTAAGGATATTCAATCACCAAGTAAAGATGTAGATAGTATTGTGGTCATGAAGCGGCCGAGCAACCTGAAGTTAATGACTGACGATGAAAAAGTACAATATTTGCTCCAAAATGGACACATACTGAAGCAAAAATATGAATTCAAACCACCGGTGAATGTCGGCCCCATAAAACCAAAACAACCCAGTCAGAGTAAAAAGAAAAAGGCTCCTGTTATTCGTCGTTCAAAGGTAAATCATACCGCTTTACTAGTGACTGATGGTCCTATGAATCCAGAAGATGATTGCATCAAGATTAAAGAACAATGCGATTTAAAGTATTTTGACAAGATACTGAAGCATGAACTCATGATAAATGATAACAAGAAAAAATCTAGGAGATCTCAGGCGAATGGGATTGACAATAACAATGATAATGCAATAAGTGATCAAAATACAGCTGATGAAAATGATAGTGACCAAAAAAATACTTCCGCAAGTAATGTTACCAAAGAAACTATGGCAATGATTGCCAAACCTAATCTTAAAAGAGGTAGAAAGAAGTCAATTGATAAAACTGgtaaaattaccaaaaataaacccatgaaaataaaGAAGGGCTCAGTAATCTTagctaataaaattaacaatgaaCGGGCTCTCGACATAACATCTTCCGAAGAGGCGATAATTAGTGAACAGAACAGacagtatttaaaaattattgagaATATGCCCAAAAAACAAAGGGGTGGCAAGAAATCCAAGCAAAAATACCCTGTTAAAGTGTTACGCAAtggcataaaaaataatagccaGATTATTACTAATGAATGTGGAAATGACCAACAAAATACCACGGAAAATTTAAATGATGTAatcatttctgtaaaaaatgGAGAAATTGTCAAGATTGTTGCAACAAAaccaaaaaattctaaaagcagAACTAAGAATACTATTGGTCAAAAGGAATCCAGAGACCAACATGTCACCTTAAGCAATGGCATAATACTAACGTTATCATTCTATGAATGTGATTACTGCAGAAAGTCATTTAACAGGAAGTCATCACTACGTAGACACATACGGGCACATCTTGGTGTCAAACCATACCCTTGTCCCATTGTCAGATGCAGGAAAAAGTTCAGTACCCGTAATAACATggaaattcatttaaaaaaatttcatGATGTGGGCAAGACTAATCCAGATCATTTTGTGTGCCATATTTGTGAGAAACCGTTTCTTGTCAAACAAAACTTGGTGTTACACTTGTCAAACCATATAAAAAGCGAGAATTCTTATAAATGTGTTTATTGTGACAAAAAGTTCTCCTACCATCTCTCACTCATGCAACATGAAAAACAACATCTAGTTGCTGGACGCTATCAATGCACACTGTGTAGTATGAGTTATGATTGCCGTACCCGTCTCTACTGTCATGTCAAGAGCCATTTAAGAATAAAAGATTGGATCTGCCAGTATTGTGGTAAAGAATTTCTCAGGTGTAACTCTATGAAACGGCATGTGGAGATTTTCCATGGTGGTCATAGAATACAATGCCCCATCTGCCATAAAAAATTGAAAGGCCACCTGACTGAACATATGCGTGTCCATGAAAATAAGAAGCCCCATAAATGTTCTGAATGTGGGATGCGTTTCACACAGTCTACACAGTTGACTGTACACCGTCGGAGTCATACTGGGGCCAGGCCATATCCCTGTAGGATATGTGACCGTCCCTTCACTCATTCAAATGCTCTAATGTTGCATATTAGACGACACACCGGAGAACGACCTTTCCCCTGCACCATGTGCCCACTCTCGTTTTCACAATTACCACATATGAAAACACATTTGCGCAAAATACACGGAGAACAGTTTCCATACAAATGTCCAAAATGTCCTGAAATGTTTAAGCTGAAAGTGAAAGTTGCTAGTCATTTGAAGACATGTACGGCTGGAGATGGACAACTAATAGATGAAAAACCGAAGACAGATGACATAGAAGTGGAGTCTCCGATGACGCTGAGCCGCATGAGGTTCCTGCTGGCACTCCTATTCACGATGATTGCTAACAAAGAGAAACTCAAATATTTAGGTTTCAACAAGCGTCTGATTGACCATATCCTTGATGAGTCTTTGGAGGCAATGGGTCAGACCCCTTGCAAGGACGAGAACCTGTCGCCTATAAAACGCCTCCGGACGAACATCGACATGTTATTGAACGGGACTGTTCCTAAAGATCAGATGGACAAGTTCAAAAATGAGAACAAGAGTACCGAAGAACTGTTGGAGCTATTGACGAGTGGGAAGCAATag
Protein Sequence: MANVKSRLKAPKSASVKKGRSNPKAKLTGAKDIQSPSKDVDSIVVMKRPSNLKLMTDDEKVQYLLQNGHILKQKYEFKPPVNVGPIKPKQPSQSKKKKAPVIRRSKVNHTALLVTDGPMNPEDDCIKIKEQCDLKYFDKILKHELMINDNKKKSRRSQANGIDNNNDNAISDQNTADENDSDQKNTSASNVTKETMAMIAKPNLKRGRKKSIDKTGKITKNKPMKIKKGSVILANKINNERALDITSSEEAIISEQNRQYLKIIENMPKKQRGGKKSKQKYPVKVLRNGIKNNSQIITNECGNDQQNTTENLNDVIISVKNGEIVKIVATKPKNSKSRTKNTIGQKESRDQHVTLSNGIILTLSFYECDYCRKSFNRKSSLRRHIRAHLGVKPYPCPIVRCRKKFSTRNNMEIHLKKFHDVGKTNPDHFVCHICEKPFLVKQNLVLHLSNHIKSENSYKCVYCDKKFSYHLSLMQHEKQHLVAGRYQCTLCSMSYDCRTRLYCHVKSHLRIKDWICQYCGKEFLRCNSMKRHVEIFHGGHRIQCPICHKKLKGHLTEHMRVHENKKPHKCSECGMRFTQSTQLTVHRRSHTGARPYPCRICDRPFTHSNALMLHIRRHTGERPFPCTMCPLSFSQLPHMKTHLRKIHGEQFPYKCPKCPEMFKLKVKVASHLKTCTAGDGQLIDEKPKTDDIEVESPMTLSRMRFLLALLFTMIANKEKLKYLGFNKRLIDHILDESLEAMGQTPCKDENLSPIKRLRTNIDMLLNGTVPKDQMDKFKNENKSTEELLELLTSGKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -