Basic Information

Insect: Pseudoips prasinana
Gene Symbol: prg
Assembly: GCA_951640165.1
Location: OX621236.1:28235419-28237217[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.014 2.3 10.8 0.3 1 23 204 227 204 227 0.96

2 9 1e-06 0.00017 23.8 1.4 1 23 233 255 233 255 0.96

3 9 2e-06 0.00032 22.9 6.0 1 23 261 283 261 283 0.99

4 9 3.7e-05 0.0061 18.9 0.1 1 23 289 311 289 311 0.97

5 9 3.3e-05 0.0054 19.1 2.1 1 23 317 339 317 339 0.98

6 9 0.00064 0.1 15.0 3.6 2 23 429 451 428 451 0.95

7 9 8.1e-05 0.013 17.9 1.4 1 23 457 479 457 479 0.94

8 9 0.00013 0.021 17.2 2.6 1 23 485 507 485 507 0.96

9 9 0.0047 0.76 12.3 0.0 3 23 516 536 514 536 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.014	2.3	10.8	0.3	1	23	204	227	204	227	0.96
2	9	1e-06	0.00017	23.8	1.4	1	23	233	255	233	255	0.96
3	9	2e-06	0.00032	22.9	6.0	1	23	261	283	261	283	0.99
4	9	3.7e-05	0.0061	18.9	0.1	1	23	289	311	289	311	0.97
5	9	3.3e-05	0.0054	19.1	2.1	1	23	317	339	317	339	0.98
6	9	0.00064	0.1	15.0	3.6	2	23	429	451	428	451	0.95
7	9	8.1e-05	0.013	17.9	1.4	1	23	457	479	457	479	0.94
8	9	0.00013	0.021	17.2	2.6	1	23	485	507	485	507	0.96
9	9	0.0047	0.76	12.3	0.0	3	23	516	536	514	536	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATAATCGCTAATTTCCACGCGCTATGTCGATTGTGTCTGAACAAAAGCTCGTTCGTTACATCAATATTTGCATCTGCGCCAGACGACCACACTAATGTTTCATTAACCTCGAAAATTGCAGAATGTTTCGAGCTCCAGATAGATCCCAATGATGGGCTACCAGACAAAATTTGCTACAGATGCTTGTTCAAAGTGGATAAATGTTCTAAATTCAGATTACAATGTTTACAAAATGAATCCAGGCTGAGGATGATAACAAGCCGTATGAATGAACTGGACAACACAAATTCATCAGAACTCAGCAATTACAACTACAACACTCAGGAAGTACATAAGCCGAAACCTGAAGATTATATTGTGGAAGATAGTGTAGTAATGGTAGTGGATCCAAGCCTTGACTATGACTCATCAGAGGAGTCTGAGAACACAGAGCCAGTGGAGCAGGAAGTGACTGAGAGAGACAATACTCCAGAAGGAGAGCATATACCAGACAcctttaaaaatgtattcatgTGTCAATACTGTGATCAAGCCTTTATCTGTCAAGAGAAATGTAAGGAACATGAACTAAGCTACCATGACCCTAACTTACCTTATAAATGTGTTGAATGTAGTCTAGTATTTGCTGAGCGGAGTCAAAATGTGCAGCACACTAAGCAAGTCCATGGAAACGATAAGCCTTACCACTGCCCTGAATGTGATAAAAGTTTTGGCAGACGCTCAGATTTAAGGAAGCACTCTATTGTCCATACAGGTATAAGGCCATATCAATGCCATTTTTGCTTTAAGAGCTTTTCTCGTAATACTAATTTAAGTAAACATCTCCGTATCCATGCTGGACACAAACCACATGTTTGTCCACTCTGTCCTAGAAGTTTTGTGGCTAAAGGAGATTTAGAACGCCATGTCCTTGTGCACTCAGGTCAGAAACCTTATAGTTGTCAGAAATGTCCATTGTCCTTTCGTAGAAGGGATAAACTCCTCAAACATGAAATGAAACATGGCCCTGCTGGCCAAAAGAATGAATTTGACAATGAACAAGATATGCATGACATGGTTGTAAATGTTAACCCCTTTAGTAATCTCATGACTTCACCTACTCAGCTCCAACCTGATTCCTCAAATGCAGAATATGATTTACCCAGAGTCCCAGATCATATATCTGGTGAGAGTAGTTTTATGAAAGTACAGAAAAATTCTGTGCCCTCTAAGCAAAATTCTCCACCTAAACAAAAAGCTGTGGCCAATAAAAACAGACCTAAAAATATAAAGTGCCATCAATGCCCTAAACGGTTTTGTTCTTTAGATTCTTATAAAACACATGTGTCCATTGCACATATTGGATCTAGAATATTTCAATGTAAGATTTGCTTTAAGAAATTCCCTAGAAAGAGAGAGTTGGACAGGCATGTTGTCCTCCATTCTGGTATGAAACCATTCTCCTGCAGTCAATGTGATAAAAAATTCACTAAGAAAGATAAACTTGACAAACATGAGGAATCTCATGAATGCTTGGTTGTGAATATGCCTTGTATAGAATGTGGTGCCACTTTTGAGAAGAAACCAGATTTAGTCGCTCATATAAAATCTCATTTCACTGAAAACTTTGATGAAAAAATACCTGATACTGAGATCAAACAGGAAGATCAAGAATTTTCATTGGAGGACAATTTTTATGACCTAGAGACTTGA
Protein Sequence: MEDSYIIANFHALCRLCLNKSSFVTSIFASAPDDHTNVSLTSKIAECFELQIDPNDGLPDKICYRCLFKVDKCSKFRLQCLQNESRLRMITSRMNELDNTNSSELSNYNYNTQEVHKPKPEDYIVEDSVVMVVDPSLDYDSSEESENTEPVEQEVTERDNTPEGEHIPDTFKNVFMCQYCDQAFICQEKCKEHELSYHDPNLPYKCVECSLVFAERSQNVQHTKQVHGNDKPYHCPECDKSFGRRSDLRKHSIVHTGIRPYQCHFCFKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLERHVLVHSGQKPYSCQKCPLSFRRRDKLLKHEMKHGPAGQKNEFDNEQDMHDMVVNVNPFSNLMTSPTQLQPDSSNAEYDLPRVPDHISGESSFMKVQKNSVPSKQNSPPKQKAVANKNRPKNIKCHQCPKRFCSLDSYKTHVSIAHIGSRIFQCKICFKKFPRKRELDRHVVLHSGMKPFSCSQCDKKFTKKDKLDKHEESHECLVVNMPCIECGATFEKKPDLVAHIKSHFTENFDEKIPDTEIKQEDQEFSLEDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185530;
90% Identity: iTF_01076832;
80% Identity: -