Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621235.1:21571278-21587760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0012 0.2 14.1 0.3 2 23 212 234 211 234 0.94

2 12 3.2 5.1e+02 3.4 0.3 6 23 244 261 242 261 0.92

3 12 0.00022 0.036 16.5 1.5 1 23 295 318 295 318 0.95

4 12 3.3 5.4e+02 3.3 0.3 5 23 327 345 325 345 0.93

5 12 0.0016 0.26 13.8 0.4 3 23 353 373 351 373 0.96

6 12 3.9e-05 0.0063 18.9 2.9 1 23 381 403 381 403 0.97

7 12 0.0011 0.18 14.2 2.0 1 23 412 435 412 435 0.97

8 12 0.00032 0.052 16.0 0.2 1 23 441 463 441 463 0.97

9 12 6.5e-06 0.0011 21.3 1.6 1 23 469 491 469 491 0.98

10 12 0.00056 0.09 15.2 1.0 1 23 496 518 496 518 0.98

11 12 4.3e-06 0.00069 21.9 4.2 1 23 524 546 524 546 0.97

12 12 0.0002 0.032 16.7 2.9 2 23 553 575 552 575 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0012	0.2	14.1	0.3	2	23	212	234	211	234	0.94
2	12	3.2	5.1e+02	3.4	0.3	6	23	244	261	242	261	0.92
3	12	0.00022	0.036	16.5	1.5	1	23	295	318	295	318	0.95
4	12	3.3	5.4e+02	3.3	0.3	5	23	327	345	325	345	0.93
5	12	0.0016	0.26	13.8	0.4	3	23	353	373	351	373	0.96
6	12	3.9e-05	0.0063	18.9	2.9	1	23	381	403	381	403	0.97
7	12	0.0011	0.18	14.2	2.0	1	23	412	435	412	435	0.97
8	12	0.00032	0.052	16.0	0.2	1	23	441	463	441	463	0.97
9	12	6.5e-06	0.0011	21.3	1.6	1	23	469	491	469	491	0.98
10	12	0.00056	0.09	15.2	1.0	1	23	496	518	496	518	0.98
11	12	4.3e-06	0.00069	21.9	4.2	1	23	524	546	524	546	0.97
12	12	0.0002	0.032	16.7	2.9	2	23	553	575	552	575	0.95

Sequence Information

Coding Sequence: ATGGCTTTGGGTGTGAAAGACTTGTGCAGATTATGTGCAAAAAAAGATGAGTTTTCAAAAGATTTGCTGGATGAAAGTAAcagaaatgtattaaaattaatacaagaTTTCATACAAATCATCGTATATGAAAATGATAATCTGCCTACAAAGATTTGCCTGAATTGCGAAGAAAAAATGGTGTCATTCCAACTGTTTGTACTTGAATGCTGCAAAGTGCAAGATACATTAAAGAAAATGTATCAAGAGACTTACGACGCTCAGcaaattaaagttgaaaatggcCCGTTTGAGTTTGAACCTCCAATAAAATCAGagGTCAAAGATGAGATAGATGTAACAGCTGAAGATATTGTTTGTGCACTAAATAGTGATGCCACATTATCAGTGATAGATGCTTACCCAGATGATAGTCATCAATTAGATGACAGTCATCAACTAGATGACAGTCATCAACTAGATGAtggagatgatgatgatgatgatgaatatctaGATGATATTGCAATAGCATCTTTGAAGTCACTGAAATCAAAgagaattaaaagaaaagaaataactGAGGAAGAAGCTGAAGAATTCAACCAAGTTCTCAAAAAGTCTGGTTTAAAAGTTAAAGATTTTGTAAAgTTGGAGTGCAACTTCTGTGAAGAAAAACTTAAAACTTGGAGCAGCTTACGTGTTCATTATGCAAAGGCACATAAGAGCAAACCGTTTGTCTTTTGTTTGTGCGGTTTTGCAGTGAGGTCTAAAAgtgttctttacaaacatgtgtCAGACCATAAGCTTGAGAGCCGCAAGTTGAAGAAGAATAATTCTGAAACAGATGACGAAAAACAAGATGTGAAGTATTCAAGTCTGAATGTTAAAGATTttataagatTTATTTGTCCAACCTGTGAAAAGCAATGTTCTAGTTGGTACAGTTTAAAGGCGCACAGTGAAACAACACACAAAGTGTCACCTGTAGTGAAATGTGTCTGTGGTATCACTCTGAAATCCAAGTCGGTTATGTATAAACACGTACAAGACCATAGAAATCCTAATGTATTAGCctgTGACAAATGCCCTCGAATAACTAAAACGATATCTGCcttaaataaacacaaaatgAGACACATACCAAAGTCGGAAAGAAGATTCTGCTGTTCATCGtgtgataaaatatttaattctaaagaTGCATTGAAATCTCACGTGCGGTCGCATATACCCATCGAGGatagaaaaatatatcattGCGAAATGTGTAATATGAAGTTCACGACCCGTTCTTCTGCCGCGTCCCACAAGCGCGTGGTGCACGAAAAGATCAAAGGCTACGTGTGCGACTTGTGCGGATATGCGTGCGGTACCAACGGGGAGCTGCGCCAGCACCGCGCCATACACAGTGACGAGAAGCCCTTCGTCTGCAGGACCTGCGCCAAACCGTTCAAGACTTATTCCAACTTAAAGACTCACATGGATACTCACGAGTCGACCTCATACGAGTGCTACATCTGCCGGCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCACTTACTCGTGCACGAAGACAAGTGCAGGCATGTCTGCTCCTACTGCAATAAGGCGTTCAAGCGGAGACAAACGTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTTACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGCGCACGCGCTCGACGGCTACCAGGGCCATCCGCACATCAGCGTGCAGTATgactatataaataaagatgtaTCAGCTATAAGTGCACCCGTAGCTAAGAACGAAGTCGAGGCTATGTAA
Protein Sequence: MALGVKDLCRLCAKKDEFSKDLLDESNRNVLKLIQDFIQIIVYENDNLPTKICLNCEEKMVSFQLFVLECCKVQDTLKKMYQETYDAQQIKVENGPFEFEPPIKSEVKDEIDVTAEDIVCALNSDATLSVIDAYPDDSHQLDDSHQLDDSHQLDDGDDDDDDEYLDDIAIASLKSLKSKRIKRKEITEEEAEEFNQVLKKSGLKVKDFVKLECNFCEEKLKTWSSLRVHYAKAHKSKPFVFCLCGFAVRSKSVLYKHVSDHKLESRKLKKNNSETDDEKQDVKYSSLNVKDFIRFICPTCEKQCSSWYSLKAHSETTHKVSPVVKCVCGITLKSKSVMYKHVQDHRNPNVLACDKCPRITKTISALNKHKMRHIPKSERRFCCSSCDKIFNSKDALKSHVRSHIPIEDRKIYHCEMCNMKFTTRSSAASHKRVVHEKIKGYVCDLCGYACGTNGELRQHRAIHSDEKPFVCRTCAKPFKTYSNLKTHMDTHESTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAHALDGYQGHPHISVQYDYINKDVSAISAPVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707233;
90% Identity: -
80% Identity: -