Ppra005141.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621236.1:8186062-8195546[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.3 49 6.6 0.5 1 23 201 223 201 223 0.94 2 28 0.00054 0.087 15.3 0.4 2 20 251 269 250 271 0.93 3 28 0.00043 0.07 15.6 1.9 3 23 302 323 300 323 0.95 4 28 9.6 1.6e+03 1.9 0.1 2 12 341 351 340 353 0.86 5 28 0.0049 0.8 12.2 0.4 2 23 372 394 371 394 0.96 6 28 0.0034 0.56 12.7 0.5 1 23 413 435 413 435 0.95 7 28 0.001 0.17 14.4 0.9 2 21 475 494 474 495 0.92 8 28 0.0039 0.64 12.6 3.8 2 23 540 562 540 562 0.97 9 28 0.0039 0.63 12.6 0.6 1 23 612 635 612 635 0.97 10 28 0.013 2.1 10.9 1.5 1 23 689 711 689 711 0.97 11 28 0.00097 0.16 14.5 5.4 1 23 722 744 722 744 0.98 12 28 1.6 2.6e+02 4.3 0.8 2 23 756 777 755 777 0.94 13 28 0.005 0.81 12.2 0.5 1 23 787 809 787 809 0.98 14 28 0.011 1.7 11.2 6.7 1 23 836 858 836 858 0.96 15 28 0.01 1.6 11.3 6.0 1 23 869 891 869 891 0.97 16 28 2.7e-05 0.0043 19.4 0.9 1 23 899 921 899 921 0.98 17 28 0.001 0.17 14.4 0.2 2 23 941 963 940 963 0.97 18 28 0.14 22 7.7 3.3 1 23 1010 1032 1010 1032 0.97 19 28 0.019 3 10.4 2.8 2 23 1043 1065 1042 1065 0.95 20 28 0.02 3.2 10.3 0.2 2 23 1088 1109 1087 1109 0.95 21 28 4.7 7.6e+02 2.9 5.6 2 23 1152 1174 1151 1174 0.95 22 28 0.0032 0.53 12.8 0.2 2 23 1190 1211 1189 1211 0.95 23 28 0.0084 1.4 11.5 0.7 2 23 1250 1272 1249 1272 0.95 24 28 2.6 4.3e+02 3.7 4.5 2 23 1289 1307 1289 1307 0.88 25 28 0.74 1.2e+02 5.4 0.9 2 19 1351 1368 1351 1372 0.88 26 28 0.24 39 6.9 0.5 2 23 1379 1400 1378 1400 0.93 27 28 0.043 6.9 9.3 0.6 2 23 1411 1433 1410 1433 0.95 28 28 0.28 45 6.7 2.0 1 19 1470 1488 1470 1488 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTTTGCCTCAAGCTTGGCGATTTCTTCTCAATATTCACAGTGGACAATGCGTTGCAGCTTGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGAAGGCGATGGCCTGCCGGATAAGGTATGCTCTGAATGCGTTCAGAAGCTCAGCAGCGCGTACATCTTCAAACAGCAGTGCGAACGAGCCGACCAGGAGTTACGACGCAATTATGTCCCACCACCAGGCTTCAGCATCAGTCCTCCACCACCCAACCGGCAGAGCAGCGACTCGGCCTTTTCTAACCATACCGATAGCTCCAACCTGACCAAGCCTTCGTCCTTTATAGAGGAAAAGGTATCTCCACCAAAAAGGAGCAGAAAACGTAGTATGGAAAGCGTGGACGCCGCTTCTACAGCCGATAGTGATTACCAACCAACGGTATCTAAACGTGTCGAGGAACTCCGGAAAACACAGAAACGACCAAAAAGAGAAAACCCGCAAGTGGACAACTCTCAATTAGAATCTGACTTTGATGACAATAGCATGTCGTTCGCAAGTGAAAATGACTCCGATGAACCGCTATCAAATAGTTTCGCGTGTAAAGTGTGCCCCAAACGATATTTGACATACCGAAGTCTCGCGATCCACTCAAAACTGCACACGAATAAGACCGTAGAAGAAAACGTTACATTGGAAGTACCGGAGAACAATGTGGACGCTGTAGATGTGGAAGACAAACTTAGCTGTGACAAATGTGATAAGACATTTAAACTGAAAATCATGCTGAAACGTCACCAGGACGTATGTGGCAAGACGCCTATCAAGTCCCCGGTAAAACAACTTCTCGTATCCTTAGAGCCGATCGATAGTGTGATGCACAACAGGAAAATAAACTGTGAAATGTGCTCTGCCAAGTTTAAAACTATGGATAATTTGGAGAAACATATGAAAATTTGTCACGCTGCTGTTTTGAAGCGAAATGATCTGAAACCAAATCCGAAAGTGCCAGTACCTTGCCTGTATTGCGGCCAAGAATTTAACGACTACTATATACATAGTGCGCATTTTGGTTCGTGTTCGCAGAAAGATGATTCTCTACCTTTAGAGTGTCCTGTATGTAAACGTGTTATGTCTCGGAAGGCTTCGTATTTCCAGCATATACGGAATATGCACTTGGAGCCACGCACCCCTTTTAAAAAGTCTATTGATGCTGAACCCGAGGAAAGCCACGCGTGTCGTATGTGCAACAAGAAGCTGGCTTCTCAGGATCTTCTCATAAAGCATTTGGCCGTGCACATGTCAAGTATTGAAGACAATGAAAATGGCGCAGATAATGAAtcaagaGCAAGCACAATGGACGATTCAATATCTATACAGTCTGTACGTAGCGCGGCTCATACACCTGTTGGTCTAAAATGTAGCTTATGTGACAAAGAATTCAAATACAAAAAGGCACTACAAACTCACGAACAGAAGTGTAATTCCGAACCGTCGACGGAGGTGAAAACTGAACCACCTGATAAAGCATCTACTAGTTTATTAAGTGAATCGTATTCCTCGCAGCAAGACTACAAATCAGATTCAGAATCTAGTCAAGAAGAAGATAATACTTGTGATATATGCGAGAAACATTTCTCGTATCGCCGACTCTTAGTCCAGCATAAGAAAACGAAGCATAACATGAGCTCTGGAACAAAACGAGCCAAAATCTACCTCAAAGATTGCTCAGTCCGATGCTTAATATGCGACCTCGATATGAAGGTTAGCGCCATCAACGAGCACAACCAGAAACATATATCTATGAACATGAAACCAAGAAACTTGTATACTTGCGCGGAATGTGAAGACACATTCAAGAGCTGTAGCGCATTAGCCACTCATATAAAACTGATACATAGATTGAACCAAAAGAGGATGGAAAACCTTCCTAATCCGGCGGATTTTTGTGAAGTCGTTGTGACAAAATCGGAACCCCTGGAATCGGTCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCAACATGAGCGGCAAGCCGTTGGTAGACCTGACTGGCTTCACTTGTCACATTTGCTCTAAGAAGATGCCCACTCTCATATCACTTAAGAGGCATGTTAACTGGCATTCTAATGTCGGCAATAATGTCGAGAAAAAGCACGAGTGTTTCGTCTGTAATGAGGTTTTCAAGTTCCAGCGACACTACAAGCTGCACATGCGCGTGCACTACACGGACCCCAACCTCGACCCCAAGCACCTGACGTGCGCGACGTGCGGGCGCCGCTCCAAGCACCTGCGCGCCGCGCTGGCGCACTTGAACTTCCACAAGCAGACGCGCTTCCAAGGCAAAGACTACCAGTGCTCGATCTGCGAGCGCGTATTCCAGTACCGCAAGGTGTACCTCAGCCACATGGCCGTGCACTACAAGCGCGGCGACAACCACGACTCTGTGGTGGGTGACTTGCCGTCCGTGTCCGCCACGGCTACCATGGATGGAGCTCACTCCTGCCACTTGTGTGGCAAGGTTTGCAACTCAGAGAACTCGCTTAAGCACCACCTCATCTGGCACACCTCCAAGACGTTCCTGTACGGCGCGCGCCACGAATGTCATCTCTGCAAGATGAAGTTCACCAACAAACGGCGCCTGGAGTACCACATCCGCGAGCACTACGAGGACGACGCCGGACCCTATAAATGCACCATTTGCGGCAAGGGATACACTGATGAAAACTACTTTCAGAGGCATGTTAAAGGTCACAATTTCGACCATCAGTCTCATCAAAAGAGAATTGAGAAACTGCGAAAAGGAAAAGTAAAATGTCCCATATGTTCCCGATTCTATGCAGATGTTGTAAAACTGATCCGCCACTTGCGTCGAACGCACCCGGAGAGCAAGATGATCAAGACGGACCCCGACGCGCCACCGCAACCGCTGTTCTCGTGCAAGTTGTGCGCTCGGGTGTTCCTCGATGAGAAGCGTTTCAAATATCATGAAGAAGCACATTTGAGAAAGCCAGAATTCTTTAAGTGCAAATTCTGCGGGAAAAAAACTATATCGCTGAAGAACCACAATGTTCATATAAAAGGTCATCTGACACAAAAGTACTTCGAGAATCCACTGAAATGCACAAATTGCGACGAGAAGTTCATCAAGGGTTATGACCTACACCACCATCTCCGCGACGTGCACGGCATCAATGAGACGTGGATCGCAGAGCGCACAGACCAGCCGCTCAGCGGCCCGCTGAAGGACTTACAGTGCTCTATCTGCATGAAGGTACTGGCTAGCAAAGGGAATTACGAGCGACACATCGACTACCACAACTCTCTGCGATGTAACTACTGTTTTGATTACTTCAGCGCTCTCCGGTTTTTGGAGGGGCATCTGGGATTCTCGTGCGAGAAGAAAAAACTACTGGGTGATACAGAAGTATATCCTAAGAAGGTGAAGTGCCACATCTGTTACAAGGCGTTCCACGTGCAGGTCAAGCTAGATTGTCATCTGCGTACTCAACATAACATCAAGGTGAACCGCGAAATGTCTtcagaaaagaaagaaatagtgtGCGATTATTGCTTTAAAGTCTTTGAAAACGAGTACGCATTGTCCACTCATAAGATTTACCATCGTACCGTTGGGTACTTCGGTTGTATCTACTGTAATAGGAAATTCGGCACCATGACTTTGTATCGCAAACACAAGAACCATCACTTCAGTCAGCTAAATGTCGACAACCCCACCAAGTGCGAGCACTGCGATGAAACATTCGTCCCCTTCCGAGAGATGATCTACCACATGAGAGATGTGCACGGCGACGACAAAGAGTGGATCGTGATGCCCAAAGAGTCAATTGAGGAAACTTGCCAGATCTGTAACAAGACTTTCTTCAACTTGCACAAACACCTCACGTACCACGAAGAGAACCGGTGTAAGAAATGCGGCGAGTATTTCCTGTCGGTCGTAGATTTCGACAATCACCTGTGCTCCATCGAGAGTGATGATGAGGTCGCTTCAACGTCGGGCGTGGAAGCTCCCAAGTACGAAGAGTGTCAATTCTGCTTCAAAGCCTTCACTAGAGCGGGCTCTAAGCTTAAACACGATCAAATACATAGAGGATCCGGCTCCATATCCTGCAGATTCTGTCCACTCAAGTTTAAGACGATGGACGCGTTCAACATACATGCCTTCTCCCATCGCAGTAGAAAATACGTTAAGAAGCCGATAAAGTGTAGAATATGTCGCGAAAAGTTCATAAAATACGGACCTTTCATGAAGCATATGAAACTTGTGCACAAATCTACGAAGAAGATGCACTACCGGGCGGTGGTGAAGGCGGAACGCTGCGTGGTGTGCGGAGATGAGTTCCCCAACCTGCACAACCACTACCGAGCGCATCTTTTCCACCAGTGCCAGCTCTGCAACAAGTACTTCACCTCGGCCAAGGTGTTCGCGAAGCACGACTGCGACAAGGAGGATTCCGATCCGTCCAAAGTATTCGAGAGTGATGCCAACTTGCCAGAGTTGATCAATTCATACCTACCGAAAGACGAGAAGGACGatgagaagttctacggacactCGGATGatgaggaagaagaagaagaggaagaaatgGAGCCTCTCGCGTACCCTGTGGGTGAAGACGAGGAGGAAGAAAGTCAAGATTCTAAAGCCTTGCCAGACTTGCCAGGTCTGCCGCTATCTATCCAGTCACCTATTATCTCGCAAGTGTTGTCGCTGTACAATAAAGAAGCTACTAAGCATGAGGTGAATGGAGTGGACCACGGCATAGACGATGACGTAGTAGACATCACGGATGACGACATCGACGTCAACTCCACGATAGTAACGGTGGTAGTCATTGATGACGAAGAGTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFFSIFTVDNALQLAEMAMECARVKIYEGDGLPDKVCSECVQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDSSNLTKPSSFIEEKVSPPKRSRKRSMESVDAASTADSDYQPTVSKRVEELRKTQKRPKRENPQVDNSQLESDFDDNSMSFASENDSDEPLSNSFACKVCPKRYLTYRSLAIHSKLHTNKTVEENVTLEVPENNVDAVDVEDKLSCDKCDKTFKLKIMLKRHQDVCGKTPIKSPVKQLLVSLEPIDSVMHNRKINCEMCSAKFKTMDNLEKHMKICHAAVLKRNDLKPNPKVPVPCLYCGQEFNDYYIHSAHFGSCSQKDDSLPLECPVCKRVMSRKASYFQHIRNMHLEPRTPFKKSIDAEPEESHACRMCNKKLASQDLLIKHLAVHMSSIEDNENGADNESRASTMDDSISIQSVRSAAHTPVGLKCSLCDKEFKYKKALQTHEQKCNSEPSTEVKTEPPDKASTSLLSESYSSQQDYKSDSESSQEEDNTCDICEKHFSYRRLLVQHKKTKHNMSSGTKRAKIYLKDCSVRCLICDLDMKVSAINEHNQKHISMNMKPRNLYTCAECEDTFKSCSALATHIKLIHRLNQKRMENLPNPADFCEVVVTKSEPLESVQSHNDFGEVPGNMSGKPLVDLTGFTCHICSKKMPTLISLKRHVNWHSNVGNNVEKKHECFVCNEVFKFQRHYKLHMRVHYTDPNLDPKHLTCATCGRRSKHLRAALAHLNFHKQTRFQGKDYQCSICERVFQYRKVYLSHMAVHYKRGDNHDSVVGDLPSVSATATMDGAHSCHLCGKVCNSENSLKHHLIWHTSKTFLYGARHECHLCKMKFTNKRRLEYHIREHYEDDAGPYKCTICGKGYTDENYFQRHVKGHNFDHQSHQKRIEKLRKGKVKCPICSRFYADVVKLIRHLRRTHPESKMIKTDPDAPPQPLFSCKLCARVFLDEKRFKYHEEAHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTQKYFENPLKCTNCDEKFIKGYDLHHHLRDVHGINETWIAERTDQPLSGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSALRFLEGHLGFSCEKKKLLGDTEVYPKKVKCHICYKAFHVQVKLDCHLRTQHNIKVNREMSSEKKEIVCDYCFKVFENEYALSTHKIYHRTVGYFGCIYCNRKFGTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVPFREMIYHMRDVHGDDKEWIVMPKESIEETCQICNKTFFNLHKHLTYHEENRCKKCGEYFLSVVDFDNHLCSIESDDEVASTSGVEAPKYEECQFCFKAFTRAGSKLKHDQIHRGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYVKKPIKCRICREKFIKYGPFMKHMKLVHKSTKKMHYRAVVKAERCVVCGDEFPNLHNHYRAHLFHQCQLCNKYFTSAKVFAKHDCDKEDSDPSKVFESDANLPELINSYLPKDEKDDEKFYGHSDDEEEEEEEEMEPLAYPVGEDEEEESQDSKALPDLPGLPLSIQSPIISQVLSLYNKEATKHEVNGVDHGIDDDVVDITDDDIDVNSTIVTVVVIDDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076818;
- 90% Identity
- -
- 80% Identity
- -