Ppra035929.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudoips prasinana
Gene Symbol
-
Assembly
GCA_951640165.1
Location
OX621250.1:14355240-14380190[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.14 23 7.7 0.6 6 20 20 34 14 36 0.86
2 15 0.015 2.4 10.7 0.3 2 20 42 60 41 62 0.93
3 15 1 1.7e+02 5.0 0.4 1 12 210 221 210 230 0.86
4 15 0.57 92 5.7 0.8 1 19 360 378 360 378 0.97
5 15 3.1e-05 0.0051 19.2 1.4 1 23 385 407 385 407 0.98
6 15 1e-05 0.0017 20.7 0.4 1 23 414 436 414 436 0.99
7 15 0.00031 0.05 16.0 1.1 1 23 448 470 448 470 0.99
8 15 5.7 9.3e+02 2.6 0.4 1 9 495 503 495 516 0.81
9 15 0.0014 0.23 14.0 0.3 3 23 524 544 522 544 0.97
10 15 0.0093 1.5 11.4 4.7 1 23 560 582 560 582 0.97
11 15 1.9e-06 0.00031 23.0 4.5 1 23 588 610 588 610 0.98
12 15 0.0058 0.93 12.0 3.3 1 23 616 638 616 638 0.97
13 15 2.6e-06 0.00043 22.5 0.4 1 23 644 666 644 666 0.98
14 15 0.00059 0.095 15.2 1.1 1 23 670 692 670 692 0.98
15 15 0.0017 0.28 13.7 0.1 1 23 700 723 700 723 0.95

Sequence Information

Coding Sequence
ATGGCGTTAACTAATAAATCTACATGGGGGGGACCGGCGTTAAATTGTCCTCTCTGTTGTAGTAAAACTTTTAATTCTAAGCAGTCATTAATTGATCATTTGACTATTGCTGCAGAAAATTTGTACTGTCCTATTTGTGCAACAAGATTCACTTCTGTGGTACATCTCACAGAGCATCTAAGTCATGACAATTGCCAGTCGAACGATCCCAAAGAAGCTGTAGTATTTTTTAGTACTGAGTCACAAGAGAATGGCATAAAAAATTCATCTGTTCAGGCTTCTAAAGTATTTCAGAATGaatcatcgttGTCGCGATGGAACCATGATGACAAATTGGAATTGGAGCCATATGAAGCTGTTGATGGAGATGTCAACAAAATGTATGCAGACTTACTGAGCAAGCAGTTAATGAAGCCAAGTGTTCAGATGCAGGAACTGAAGTTAGTGGAAGAAAACGGGGAAAGCCAGTATTTGATTCTCACACAAGACAGTACAGATGGCTCCACTATAGTCACCAAACAGAATAATGATGGCACTATATCACTCACTTCAGTGAATGaaatgaaaatagagaCAGATGCAATGATAGCCCCGGAGGTAGAGCCTGAAGATAATCCAGAAGAGATATACAGCTGTAACACCTGCAAAGTATCCTTTTCTTCTGTCTTGGAGCATATACAGAACTACCATAATGATCAGGATGTTGTTGTGGAgGAACCAATAGAAGATAATGAAAACGAGTCACTTCCAGTAGAATATGGTACTCTTGAGAATGAGGATTCAATGCTATCGGCAGACAACCAGGCGCCGCGACGGGTAATCACTGATACAGGCGACATTGTGGAGGAGCCTTTACTCTTTAAAAATGATCCTATGGTGCAGCAAGAGGTTTCAGATGCCGCAACTCAAGAAGAACCCAAAACGGCTGAGACGCGTGTTTACGCGGAATCCGCTACGCAGATAGAAAATGACGTCATTGTTAATGAAATTCCGCCAACCGATGGGAAAAGCGGTGGTCCGTACCATAAGGTGATAGTGAAAGAACTTCAAACGGAGTCAGGACTTAAGATCAAAATGTATGAATGTATGACGTGCAACATTTGTGTCAACAACTTGAACAACTTTAAAATACATCCCTGTAAAGCAATGAAATATACCTGTCCCCATTGTCCTGTGGCGTACGAAAATTCAAAATCTCTATGTGCACATATGAAAGGACACAAACTAAAATCAGtgaaaTATACCTGTCCTCACTGTCCTGTGGCGTATGAAAATTCAAAATCTCTGAGTGCGCATATGAAAATACACAAAGTAAAAGCAGATACTGACGCTCCTACGTCATATGAATGTGAGATTTGTAACACGGTgtttctaacaaacaagtcaTTGAAGCTACACAAACGGATGCACGATCCTATTAAAGCTCGTCCAATAGACCCGCCGATAGAAACAAACGACGGTAACGTAGGAAGCGTGGACCGCTACCACTGCACTGTTTGCGACAAAATGATACCCGAAGACTACCGCTCCATACACCAGGCCTCGCACAAGAACAGCGACAAGATGAACTGCACCGTATGCAATAAGAAGTTTTTGTCCGCTGAGTATCTTGAAATGCACATGAATGTACATAATTTGGATAAGGTGCCTATAAGTAAGCAAGACAAATCACTACCATATTGCTGTTTATATTGCAACAGAAGATTCGCTCGGCCGCACGAAAAAGTCAAACACGAACGAATTCATACAGGTGAGAAACCACACTCTTGTGAGATTTGCGGCAAGTCGTTCCGCGTGTCGTACTGTCTCACACTGCATATGCGCACACACACGGGAGCCCGGCCGTACGCCTGCGCGATTTGTAACAAGAGGTTCAAAGCGCACAGCGTGTACAACCATCACTTGCTAACGCATTCGGAAGTGCGCGCGTACAAGTGTCCGTACTGCCCGAAAGCGTTTAAGACGTCCGTACAACTCGCGGGCCACAAGAACTCGCATACGAAGCCATTCTCATGCCAACATTGTAACAGGCCATTCGCATCACTATACGCGGTGCGGGTCCACACGGAGACGCACGCGCGCACGAACAACCTCAAGTTCGCGTGCTCGCTGTGCGGCGCCAGCTACGCGCGGGCCTTCGCGCTCAAAGACCACGTCAAACAGGTGCACAAGAAGGACGTCGATAATATTGATGTTGGTCTGaaTAAAGATGAAGAATGGACGGTAAATGAAAATACAGAAGCAGACAGCATACACCCTCTCAGCAAAGATTTGCCGCAGGATGTAAGTTTTTAA
Protein Sequence
MALTNKSTWGGPALNCPLCCSKTFNSKQSLIDHLTIAAENLYCPICATRFTSVVHLTEHLSHDNCQSNDPKEAVVFFSTESQENGIKNSSVQASKVFQNESSLSRWNHDDKLELEPYEAVDGDVNKMYADLLSKQLMKPSVQMQELKLVEENGESQYLILTQDSTDGSTIVTKQNNDGTISLTSVNEMKIETDAMIAPEVEPEDNPEEIYSCNTCKVSFSSVLEHIQNYHNDQDVVVEEPIEDNENESLPVEYGTLENEDSMLSADNQAPRRVITDTGDIVEEPLLFKNDPMVQQEVSDAATQEEPKTAETRVYAESATQIENDVIVNEIPPTDGKSGGPYHKVIVKELQTESGLKIKMYECMTCNICVNNLNNFKIHPCKAMKYTCPHCPVAYENSKSLCAHMKGHKLKSVKYTCPHCPVAYENSKSLSAHMKIHKVKADTDAPTSYECEICNTVFLTNKSLKLHKRMHDPIKARPIDPPIETNDGNVGSVDRYHCTVCDKMIPEDYRSIHQASHKNSDKMNCTVCNKKFLSAEYLEMHMNVHNLDKVPISKQDKSLPYCCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACAICNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARTNNLKFACSLCGASYARAFALKDHVKQVHKKDVDNIDVGLNKDEEWTVNENTEADSIHPLSKDLPQDVSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-