Ppra064303.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621264.1:13929635-13945959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.073 12 8.6 1.1 1 23 69 92 69 92 0.95 2 20 0.00037 0.061 15.8 0.4 1 23 189 211 189 211 0.96 3 20 0.00093 0.15 14.5 2.1 1 23 216 239 216 239 0.97 4 20 0.01 1.7 11.2 0.1 2 23 247 269 247 269 0.88 5 20 0.015 2.5 10.7 0.3 2 21 276 295 275 296 0.94 6 20 0.00058 0.094 15.2 1.1 1 23 321 344 321 344 0.98 7 20 0.00065 0.11 15.0 1.6 1 23 371 393 371 393 0.97 8 20 0.24 39 6.9 4.8 1 23 419 442 419 442 0.95 9 20 3.2e-05 0.0052 19.1 5.0 1 23 467 490 467 490 0.97 10 20 0.0062 1 11.9 0.4 1 23 496 519 496 519 0.91 11 20 0.00091 0.15 14.5 5.0 1 21 525 545 525 548 0.95 12 20 9.8e-05 0.016 17.6 2.9 1 23 554 576 554 576 0.98 13 20 0.046 7.5 9.2 2.2 1 23 582 604 582 604 0.98 14 20 1.1 1.8e+02 4.8 0.1 2 14 611 623 610 624 0.88 15 20 0.00016 0.025 17.0 1.1 1 23 645 668 645 668 0.97 16 20 0.00047 0.076 15.4 0.7 2 23 681 703 680 703 0.93 17 20 0.1 16 8.1 1.5 1 23 709 732 709 732 0.97 18 20 0.24 39 6.9 1.9 2 23 739 760 739 760 0.97 19 20 0.65 1e+02 5.6 4.9 1 23 766 788 766 788 0.96 20 20 4.2e-05 0.0069 18.7 0.4 2 23 795 816 794 817 0.94
Sequence Information
- Coding Sequence
- atgaaattgaCATACGTATTTGTTGTAGGTGATGCGGAACCATTTTTCATCGAAATCGAAGTTGATACCTCGCAAACTATACCTATCGAGTGCGACCTACCCAAAGCACCAATCTTTACTGAAGTCAGCAAACACAGAGAGAATATCAGGACTATATTACTAGCGACAAACGCGACACCTATCGGCAGATATGGAAGCTGCGGATACTCGTGCTGCTTTTGTGTGGAAATATATGCAGACCCAAGGGATTTGAAACAACACACTCTTAACCAGCATAATGAAGAAAGCATCAATAACTTCATGCAAAATTATACTTTGCTTAACTATATCGTCAAATTAGATATAACAGACTTACGTTGTGAGATGTGCATGGAACCGATTGATGATCTAAACGGGATCATTGTTCATTTGACACAATACCATGATAAAGTATTCCACACTGATATCGATAATCATATAGTACCTTTCAAATTCGATTCTGATGTACTACATTGCATCGAATGCGCATTcgaatataataactttaaaatactGCTCGAACATATGAATTCTCATTACAGCAACCATATCTGTGAAGTTTGCGAGGCAGGGttcgttaataaaaaaatgcttcAAGCTCACATGTACAGACATAAAACTGGCGAATTCCAATGTTCGCATTGCACCAAAATATTTGATACGCGAATCAAAATGAAAGTACATGAGAGAGTTGTACATACTCTGATGAAAAAGCGAGGGCAGTGTACCATTTGTAGGAAACGGTTTACGGATATCAATGCATTGGTTAGTCATGAGGCGGAAGTACACGGTGAACAGAGAGGGTGGAAGTGTGAGGCGTGCACTAGGACGTTTAATACGCAGCAAGCGTATACGCTGCACATCAAATATTATTGCATTAGAGACATCGTCCCGCCCGAGTTCTACATCGACCCGGAGGATATTAAGAAAGAGGATGAGATATTCTATTGTCCAAAATGCATTTATTCTTACAATTCCAAAAATGGGTTAAAAATACATATGAGGAAGGTACATGACGAACCTATAAAAAGGGACCACGCCTGGCACAACGTCGACATCAAGACGGAAGATTGTACGGAAAAGGATCCCATGTACTTTTGTACtatatgtgataattatttcaGTAGCCAAAATGAGTTAACTTATCATTTGAAGTTACATGGTGATGACCCGTTAAAAAAGATTCAGCGCAAGTTCTTCCTTAGGTCAGAGAATTATGTATTCAAAGATGGGATTTACTTTTGTACAAAGTGTGATGAGACTTGTAAAATTAAGAAGttattgcatgaacatgtgaAGGAGATGCATTTTAAGAAATGTAAAGACAAGGATATATACAAGTATCTCAGTCCAGAAACTTATAAGAAAGAGGGTGGCAAGTTCATGTGTAAAAAATGCGACAAAATATTCCATTCAAAAGACTACCTGCTGAAACATATGAAAATGAAGCACTTCAATATAAAACTGTTTAAATGTTCAACCTGCGATGAAGCGTTCGATTATGATTACCAACTTATCCAGCATAACCAGGATGTCCACAAAATAAACGACGGATACAAATGCAATGCATGTGATAAGGTTTtcaatacaaaagtaaaattgcGTCACCATATCCAATGCTACCACATGCTCGGGGACGTATTCAAGTGCGAGTTATGTGATTACACTACATACAGTAACTTCAATTTAAAAAGACATCAAATTAAACATCAGACCGAGAAAGAATTCAAATGCAAGTTTTGTGAGAAAGAATTTCTAAGGCGAAAAACGATGCTTGTACATGAACGTATCCATACTGGTGATAAAAGGAAGGAGTGCGCCGAATGTGGTCAGGCGTTTGTCCAGAAAGCAAGCGAAATCGTCCAGCCCGCGTTCCAACTCAGCCCAGAAGATTTCGAAAAGAAAGGTGACACTTACTATTGTACAAAATGTGacaaaaaatacaaagataGAAGAGGCGTACAAAGGCATGTCATGATCATTCACTACAATATACCATTGCCGCCCAACCTAAAAGTAATAGTATGTTCTATTTGCCAAGAGGAGTTCAAGAAGCAGTCACAATTTATGAAACATAAGTTAAACGTGCACAATATTGATGATAGATTTAAATGTAACGCGTGTCCATCAGTGTTTAACACAAAGAAAATACTGAGAACACACACCCAATCGTATCACATGCTTGGAAAGAAGCGTAAGTGTAACTTATGTGAGTACGAGACGCACAGTATCGCAAATCTGTGGAAGCATCAGTTCAAACATAAGACCGAGAAAGATTATCACTGCAAATTTTGCAATAAAGCTTTTCTGCGGAAGACAACTTTGCAGTTCCACGAACGGATCCATACGGGGGACAGGAGGAAAGTGTGCGCTGAGTGTGGACAGGCGTTTGTGCAGAAAGCTAGTTTGAACTATCATATGGCGAAACATCATCCAGATGTACCGTTTTAA
- Protein Sequence
- MKLTYVFVVGDAEPFFIEIEVDTSQTIPIECDLPKAPIFTEVSKHRENIRTILLATNATPIGRYGSCGYSCCFCVEIYADPRDLKQHTLNQHNEESINNFMQNYTLLNYIVKLDITDLRCEMCMEPIDDLNGIIVHLTQYHDKVFHTDIDNHIVPFKFDSDVLHCIECAFEYNNFKILLEHMNSHYSNHICEVCEAGFVNKKMLQAHMYRHKTGEFQCSHCTKIFDTRIKMKVHERVVHTLMKKRGQCTICRKRFTDINALVSHEAEVHGEQRGWKCEACTRTFNTQQAYTLHIKYYCIRDIVPPEFYIDPEDIKKEDEIFYCPKCIYSYNSKNGLKIHMRKVHDEPIKRDHAWHNVDIKTEDCTEKDPMYFCTICDNYFSSQNELTYHLKLHGDDPLKKIQRKFFLRSENYVFKDGIYFCTKCDETCKIKKLLHEHVKEMHFKKCKDKDIYKYLSPETYKKEGGKFMCKKCDKIFHSKDYLLKHMKMKHFNIKLFKCSTCDEAFDYDYQLIQHNQDVHKINDGYKCNACDKVFNTKVKLRHHIQCYHMLGDVFKCELCDYTTYSNFNLKRHQIKHQTEKEFKCKFCEKEFLRRKTMLVHERIHTGDKRKECAECGQAFVQKASEIVQPAFQLSPEDFEKKGDTYYCTKCDKKYKDRRGVQRHVMIIHYNIPLPPNLKVIVCSICQEEFKKQSQFMKHKLNVHNIDDRFKCNACPSVFNTKKILRTHTQSYHMLGKKRKCNLCEYETHSIANLWKHQFKHKTEKDYHCKFCNKAFLRKTTLQFHERIHTGDRRKVCAECGQAFVQKASLNYHMAKHHPDVPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -