Ppra018868.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudoips prasinana
Gene Symbol
-
Assembly
GCA_951640165.1
Location
OX621242.1:9569573-9574009[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.5e-06 0.00089 21.5 5.5 1 23 125 147 125 147 0.99
2 12 0.00034 0.055 15.9 0.8 1 23 180 202 180 202 0.96
3 12 0.00012 0.02 17.3 3.1 1 23 208 230 208 230 0.98
4 12 2.1e-06 0.00035 22.8 1.9 1 23 236 258 236 258 0.98
5 12 9.2e-05 0.015 17.7 3.2 1 23 264 286 264 286 0.99
6 12 0.00028 0.046 16.2 0.9 1 23 307 329 307 329 0.99
7 12 9e-06 0.0015 20.9 6.5 1 23 335 357 335 357 0.98
8 12 2.7e-05 0.0044 19.4 0.7 1 23 363 385 363 385 0.97
9 12 0.011 1.7 11.2 3.3 1 23 391 413 391 413 0.97
10 12 1.2e-05 0.0019 20.5 2.5 1 23 421 443 421 443 0.99
11 12 1.5e-05 0.0025 20.1 0.5 1 23 449 471 449 471 0.98
12 12 0.012 1.9 11.1 7.5 1 21 477 497 477 498 0.95

Sequence Information

Coding Sequence
ATGGCATCAACATTATATAACTTTGATGATGACCATGTCGAAGAGGAATTCACTGTTTTTGACGAATTTGAGCTACCTGATAGCCTGAATGTGACAATTGAAGATAATTCTGTTTTACCTGAATTGCCTTTATATCCATTAGACGATTTCTCGTCTATGGATAATGGTTCAGTTTCTATAAAAAGCCAGCCTCAAGATATTCTAACGCCACCCAATTGGCCTCAACCTGACTTCGAAAATGTTAAGGAAACATGTGAACAGATGTTGGAGCCTGAGATTGAAAACTGTCCTCCTATTAAAACTAAACTCAACACACAACATCAGGTAAAAGACAAGAAAAAATCAAGACAACGTATTACTTCTACAAAATCTTTTAAATGTGATGTTTGCCAAAAATGTTTTAGTCAATTACGGTATTTGAATAATCATACGCGTACACACAGTGAGGGTGAGGAAGAATCTTATAAAACAAGTCAAAGTAGTTCCACACAAGAGGAGCTGTTACCAAAAGACACTTACAAACTACCTAAAAAATCTTATGAATGTGATACCTGCCAACGTAGCTTCAGGACAGAAAGTATGATCGTAAAGCATTTGTATTTACACCGCGAAAATAAATCTTATCATTGCGACATCTGTGAACTTAACTTCAAAACGGAAAGTATGCTAACAAAACATTTTAAcacacatattaataaaaaaccttACAAGTGTGAAATCTGTCAAAGGAGTTTCAGGAAACAAGAAACATTGACGAAACACGCTCAAAGTCATGTCGATAAAAAGCCTTTTAAATGTGAAACATGTCAAAGTAGTTTTAGGAAACAAGAAACATTGACAAAACATGCTCGTAAGCATATCGTTAAAAAACGTAAAGTTTACCCAAAAAGCTCCAGGAAACAAGATCCACAAGAAACTTTTAAATGTGATTTATGTGAGAATATTTTCTCGGAAAAACGAACATTGAAATTACATCTTCGCGTACACGCTGGAAATAAAGTCCATAAGTGTAGCTACTGCCAGAAATGTTTAAGCGATAAGTCTTCTTTGACGAGACATATTAGACTACACACTGGCGAGAAACCTTATAAATGTATCTTGTGCGAAAGAAGTTTTACCGATAGCCGCAGTTTGAAAATTCATATTCGTATTCATAAATGTGAGCGTCCATATCATTGTGATGAATGCCAGCGTAATTTCATAGATATATGTGGCTATAAAAGACACATTACTGTGCACACTGGCGTAATAATAAAACCATACAAATGTGAAGTCTGTCAAAGAAGCTTCAGGGAACGAAGTAAATTGAAGACGCACAGTCGTATACACACGGGTGAAAAACCTTTTGAATGTGGCGTGTGTCAGAGTAGTTTTAACGAGAATAGTTCTTTGACGAGACATCTTCGTGTACATACTGGAGAAAAACCATATCAATGTGAACTGTGTGAGAAATGTTTTAGTGATAAACGCTGTGTAAAAACTCACATTTGTAAGAAACCCACTAGTGAAAGTGATATGTCGGAGTAG
Protein Sequence
MASTLYNFDDDHVEEEFTVFDEFELPDSLNVTIEDNSVLPELPLYPLDDFSSMDNGSVSIKSQPQDILTPPNWPQPDFENVKETCEQMLEPEIENCPPIKTKLNTQHQVKDKKKSRQRITSTKSFKCDVCQKCFSQLRYLNNHTRTHSEGEEESYKTSQSSSTQEELLPKDTYKLPKKSYECDTCQRSFRTESMIVKHLYLHRENKSYHCDICELNFKTESMLTKHFNTHINKKPYKCEICQRSFRKQETLTKHAQSHVDKKPFKCETCQSSFRKQETLTKHARKHIVKKRKVYPKSSRKQDPQETFKCDLCENIFSEKRTLKLHLRVHAGNKVHKCSYCQKCLSDKSSLTRHIRLHTGEKPYKCILCERSFTDSRSLKIHIRIHKCERPYHCDECQRNFIDICGYKRHITVHTGVIIKPYKCEVCQRSFRERSKLKTHSRIHTGEKPFECGVCQSSFNENSSLTRHLRVHTGEKPYQCELCEKCFSDKRCVKTHICKKPTSESDMSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-