Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621247.1:27630547-27642157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.4e-05 0.01 18.2 2.2 2 23 158 179 157 179 0.96

2 12 0.18 29 7.3 6.3 1 23 184 206 184 206 0.97

3 12 0.0015 0.25 13.8 2.3 2 23 226 247 225 247 0.97

4 12 0.0028 0.45 13.0 6.0 2 23 255 276 254 276 0.96

5 12 7.9e-05 0.013 17.9 0.2 1 23 282 304 282 304 0.99

6 12 2.1e-06 0.00034 22.9 3.8 1 23 310 332 310 332 0.97

7 12 3.6e-06 0.00058 22.1 1.0 1 23 338 360 338 360 0.95

8 12 5.9e-06 0.00096 21.4 0.1 1 23 366 388 366 388 0.97

9 12 4.3e-05 0.0069 18.7 1.3 1 23 394 416 394 416 0.98

10 12 2.4e-06 0.00038 22.7 3.7 1 23 422 444 422 444 0.99

11 12 3.8e-07 6.2e-05 25.2 0.7 1 23 450 472 450 472 0.99

12 12 7.5e-05 0.012 18.0 0.4 1 23 478 500 478 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.4e-05	0.01	18.2	2.2	2	23	158	179	157	179	0.96
2	12	0.18	29	7.3	6.3	1	23	184	206	184	206	0.97
3	12	0.0015	0.25	13.8	2.3	2	23	226	247	225	247	0.97
4	12	0.0028	0.45	13.0	6.0	2	23	255	276	254	276	0.96
5	12	7.9e-05	0.013	17.9	0.2	1	23	282	304	282	304	0.99
6	12	2.1e-06	0.00034	22.9	3.8	1	23	310	332	310	332	0.97
7	12	3.6e-06	0.00058	22.1	1.0	1	23	338	360	338	360	0.95
8	12	5.9e-06	0.00096	21.4	0.1	1	23	366	388	366	388	0.97
9	12	4.3e-05	0.0069	18.7	1.3	1	23	394	416	394	416	0.98
10	12	2.4e-06	0.00038	22.7	3.7	1	23	422	444	422	444	0.99
11	12	3.8e-07	6.2e-05	25.2	0.7	1	23	450	472	450	472	0.99
12	12	7.5e-05	0.012	18.0	0.4	1	23	478	500	478	500	0.97

Sequence Information

Coding Sequence: ATGGAGAAAACATTGCTGTTAAAAAATTTCGACTTTTGCTGTCGTACTTGTTTGAAAGATTCAAAACAATTGTATGATGTTTTTCAAGAAACTGAAGACTCTTTAAATATTGCTGAAGCACTGGCGTCATACTTATTTATTCAGGTGGATATGGAGAGTGCCTTACCAAAGAAAATATGCAGCAACTGCTATATTAGTTTGTTAAACTTTCACCAATTTAGAAATGCAGCTTTGAATGTTAACACACAATTGTTAGACTTTCTTGAaaccaacaataataaaaatcaagaaTTTAAATTTGATGAGTTCAATGATGATTGTGACAATGAAGATGATCTCGATACACATGACTTTACTGATGAAAAAggcataataaaaaatgaaactaTTGACGATGATGTAGAATCAAGTCCTATGATTGAAGACATAAAAAATGAACCAAaagaaatagaattaaataGTAGGAAATTAAGCTGTGATATATgcaataaaaactttaaaaaagaaactcaACTGAAACGCCATAAAGCAAAACatgtgaataataaatattcttgcAGATTTTGTTCAAGCACATTCAAACACCAATACAAATATGTGAAACATCTAGTTAAACATGCCCAAGGCTCTATTAACAATACTAATGATATGAATGATAGGACTGAACAAAGCTCTAGATGTGAAGTATGCTTAAAAACATTCAAATCGATACATGCTTTGTCAGCTCACACAAAAAAACATATCATCAAAGGCAGAGTGCTCAAATGTTCTTTTTGCAATAAGATCTGTAAAAAATTAAGCCATTTGAAAAGACATGAACTTGTCCACAAGAAACAATATCCATTTAAATGCTCTTTATGTGCGAAAGCATTCTCAAATGAAATTTCATTAGCGGAGCATATCAATAAGCATAATGGCATTAAACCACATTCCTGTCCAGTATGTACAAAGTCATTTTCACATTTGTCAACGTTGACAAGTCATTTGAGAGTACATACAAGGGAGAAGCCATTTTTATGTCCAACTTGTGGAAAGCAGTTTGATTCCAGTACAAATCTGAATCAACATGTGAAGAGACATTTGGGCCAGAAGATGTTTGCATGTGAATTATGTCCAAAAACATTTGTTAGTAAAGGTGAATTGAAATCACATGTGGCTACCCACTCAAGGGAACGTCCTTTCGTCTGTGATCAGTGCCCTGCTACGTTCACCAAACGCTCTTCCCTTTCTAAACACAAACTACGGCATTTAGGGGTCAAACCATTCCAGTGTGAGACTTGTTCAGTCAGATTTACAAGCAAAGACCACTTAAAGCGACATCTGAGAATCCACACCGGCGAGCGTCCTTACCGCTGCGATATATGTGAGCGTGCGTTTACGCAGAGCAACGATCTCGTGAAGCATCAACGGTCACATTTGGGCAATAACATTTATAGTTGCAATGAATGTCCCCAACGCTTCCGGCTGAAGACTGAACTAATCCAGCATATATCAGAACACTTCATCTCTTCACAACTGAAGAGTCTAAAAGTGAGCAGTGACCAGCCTACTGGAACCCGTGACGTTATACAAGAAAATATATGcaattataaagaaaatgcTATTAATGAAAATTGTATAGAGCAAATGAATACAGCTGTGTGA
Protein Sequence: MEKTLLLKNFDFCCRTCLKDSKQLYDVFQETEDSLNIAEALASYLFIQVDMESALPKKICSNCYISLLNFHQFRNAALNVNTQLLDFLETNNNKNQEFKFDEFNDDCDNEDDLDTHDFTDEKGIIKNETIDDDVESSPMIEDIKNEPKEIELNSRKLSCDICNKNFKKETQLKRHKAKHVNNKYSCRFCSSTFKHQYKYVKHLVKHAQGSINNTNDMNDRTEQSSRCEVCLKTFKSIHALSAHTKKHIIKGRVLKCSFCNKICKKLSHLKRHELVHKKQYPFKCSLCAKAFSNEISLAEHINKHNGIKPHSCPVCTKSFSHLSTLTSHLRVHTREKPFLCPTCGKQFDSSTNLNQHVKRHLGQKMFACELCPKTFVSKGELKSHVATHSRERPFVCDQCPATFTKRSSLSKHKLRHLGVKPFQCETCSVRFTSKDHLKRHLRIHTGERPYRCDICERAFTQSNDLVKHQRSHLGNNIYSCNECPQRFRLKTELIQHISEHFISSQLKSLKVSSDQPTGTRDVIQENICNYKENAINENCIEQMNTAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -