Ppra062860.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudoips prasinana
Gene Symbol
-
Assembly
GCA_951640165.1
Location
OX621264.1:4553075-4587428[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 5.7e-05 0.0092 18.3 2.4 1 23 274 296 274 296 0.97
2 17 1.2e-05 0.0019 20.5 1.5 1 23 302 324 302 324 0.98
3 17 1.3e-06 0.00021 23.5 3.4 1 23 330 353 330 353 0.97
4 17 0.00012 0.019 17.3 1.5 1 23 359 381 359 381 0.99
5 17 0.0028 0.46 13.0 5.4 1 23 401 423 401 423 0.96
6 17 7.5e-05 0.012 18.0 2.8 1 23 429 451 429 451 0.99
7 17 6.6e-05 0.011 18.1 3.8 1 23 457 480 457 480 0.98
8 17 0.00014 0.023 17.1 0.9 1 23 486 509 486 509 0.98
9 17 0.027 4.4 9.9 2.7 1 23 515 537 515 537 0.97
10 17 6.2e-05 0.01 18.2 6.5 1 23 543 565 543 565 0.99
11 17 5.2e-06 0.00084 21.6 2.2 1 23 570 593 570 593 0.98
12 17 3e-05 0.0048 19.2 0.8 1 23 599 621 599 621 0.99
13 17 7.1e-05 0.012 18.0 0.4 1 23 627 649 627 649 0.98
14 17 1.8e-05 0.0029 19.9 0.5 1 23 655 678 655 678 0.98
15 17 2.3e-05 0.0038 19.6 3.3 1 23 684 706 684 706 0.99
16 17 0.12 19 7.9 4.4 2 23 813 834 812 834 0.96
17 17 0.13 21 7.8 0.1 1 20 840 859 840 861 0.94

Sequence Information

Coding Sequence
ATGGAGAAAATGATGTGTAGAATATGTTTGGCGCAAAATATCCGCATGTATCAGATTGTGAACGCAGACTTGCAGCTTGTTTATACGAAACTGTCTAATTGTGTGtttGTATTGGAGTCCAGGCCGTTGCTAACATGCTATATTTGCTACGTTCGGCTCAAACACAGCCACCAATTAATGAGGAAGTGCATCCAGTCGGAAGAGATCCTCACGCAGATGGCCAATGGCATTCAGcaCGATCGTCGCCTGATAGAGGCACAGCTCTCCAACTTCACTTCCCTGATGGTAACATCAGTGCAGCATCACAATATGAGCGACGAAGCTGATGTGAAGAAGGAGGCTCCTGATCTCAAGACCTTGGAAAATGCGGAGAAGCCTTCAGAGCCACAGGAAAATGAATCCCATCCCTTtgaaatagattttaatttGGATCAGCCCATAAAAACAGAGCCAACGTTTGTAGACGACCCTTTGGAAGCGTCATCTGGTTCAGGAGCAGATGGGCTCATAGACATGCAGACAGACAAGAAGTGCGATATCCACGTCACAGAAGTCCAGGTGTCTGACCGATGTTATGCTGTGGAGTTAATGATGGAAGTTGAGGAGGTTAAAGaacCAATCCCGGATGTGGATTTAAACAAGGTGAAGTGCGAGTTCGACGCTGACGTGGCCATCCCGAGTACCAGTTCACAGTCCAAACCTAGGAAGGCCAAGAAACATCACGAACAGAGAACTAGATCACATGGCTCCAAGAGAATGAAGCAGCGCATGAATGATGTGGAATCTGATGAAGATAATTTGAAAAGTGCCGACAAACCTTATCGATGCGATCTTTGCCAAAGAACATTTAATCATAAAGGCAGTTTGGTGAGACATAAAATCATTCATACTGGTCTAAAACCTTACAAATGTCTTAGGTGTCCTAGAAGCTTTAGCGACAGAAGCACATTGAAAGCACACAGCCGTTTGCATACGGGCGAAAAACCTTTTAAATGTGAGATTTGTCATAAAAGCTTCGTCCAAAACTGTAATCTTATCAAACACATACGCGGAGTACACAGCGTACTAAGACCTTACAAATGCGATATGTGCCAGAGTAGTTTCAGTAAAAAGCGTACTTTAGTACTCCATATGAATATCCACATGCCAAAAGACGTGTCTGACGACAATAATGCAAACAAAGACGTAAACGAGAAACCTTATAAATGTGACACTTGTGATAGTAGTTTTCGTCACAGATGTAATTTGGTGCGACACAAAGTCATTCATACTGGCCTCAAACCTTACAAGTGTCATAGCTGTCCTAGTAGTTTCAATGACAAGAGCACTTTAGATAAACACATTCGGCTACACACTGGCGAGAAACCTTATAAATGTGACATTTGCCAAAGAAGCTTCACTCAGAGTAGTAATTGTGAGAAACATAAGCGCGTAGTACATTTAAATGAAAGAGATTTTAAGTGTGAAACGTGTCAGGCAAGTTTCACACTACGTAGCCGGCTGGAAAACCACATCAGAGTCACGCACACAGACAAAAAGCTTTACAAATGTGAGGTGTGTCACAAGGACTTTGATGGTATTGGCCATTTGAAGTTCCATATGAATGAACATGTCAACGAAAAGCCTTACAAATGCGACGTTTGCCAGAGAAGTTACAGCCACAAGTGTAACTTAAGATATCACATGAATGTACATATGGGTGTCCAATTTACATGTGAAATCTGCCAGAAAAGCTTCACGCAAGAGAGCCGCTTGTCAAATCATATGAACAAAAAGCATTTCAGTGTCAAACGGTACGAGTGCGATGTTTGTCAGAACTCTTACTACCAACTCAGCTCTTTGAAAAGACATATTCTCACTCACACGGGTGAAAAACCCCATAAATGTCAGATTTGCGAGGCTAGCTTCGCTCAAATACCCAGTTTACAAAGACACATCCGATTGCACACTGGCGAGAAACCATTCAAATGTGAAATTTGCGAGACCTCTTTCATAGAAAACAGCAAACTTTTAAGACACATCCAGAAGATACACACCCACGACAAGCCTTACAAATGTGAGAGCTGTAAAAGTAGTTTCATTAGGAAGAGTGACTTGCATAGACATATTCGCATACATACTGATAAATATTTGCTGTTGAATCAGGATATTTGTAGAGCTAAAATGATTGATATAACACTGGATCAAATATTACCATCATCAGAAATAACTGAAAGCATTGAAAACACAAGAACACCAAATGAGCATAATTATgcAAAGACACCTCCCAAACAGAAGaaagaattaaaaattatagaaCTGAAAGCTATATATAACTGCAGATGTTGTGGATACCGGACCATGAACAGAGAACTACTTTCCCGACATCCATGTCCGAAGCAAACCATAGACACAAAGAAGAATAGCCAACATTACAACAATACAGATGGATACTTACATTGCAAGAAATGTAGTTATTTCAATAAATCCAAAACGAATTTAAAGATACATATGAATATTCACACTAAAGGGAATCCTTACAAATGTACGGAGTGTGATTTTGCAGGCGAAGATTTGAAGAAACTATTAAAACATTACGAGGTGACGAAGGATTTAGTTTGTCAATGTGGCTATACTACACATTTTAAGCAACAAATGGTGGTGCACAAACGTGTTCACACTGCTAAGAATCTATACCGTCGTTGA
Protein Sequence
MEKMMCRICLAQNIRMYQIVNADLQLVYTKLSNCVFVLESRPLLTCYICYVRLKHSHQLMRKCIQSEEILTQMANGIQHDRRLIEAQLSNFTSLMVTSVQHHNMSDEADVKKEAPDLKTLENAEKPSEPQENESHPFEIDFNLDQPIKTEPTFVDDPLEASSGSGADGLIDMQTDKKCDIHVTEVQVSDRCYAVELMMEVEEVKEPIPDVDLNKVKCEFDADVAIPSTSSQSKPRKAKKHHEQRTRSHGSKRMKQRMNDVESDEDNLKSADKPYRCDLCQRTFNHKGSLVRHKIIHTGLKPYKCLRCPRSFSDRSTLKAHSRLHTGEKPFKCEICHKSFVQNCNLIKHIRGVHSVLRPYKCDMCQSSFSKKRTLVLHMNIHMPKDVSDDNNANKDVNEKPYKCDTCDSSFRHRCNLVRHKVIHTGLKPYKCHSCPSSFNDKSTLDKHIRLHTGEKPYKCDICQRSFTQSSNCEKHKRVVHLNERDFKCETCQASFTLRSRLENHIRVTHTDKKLYKCEVCHKDFDGIGHLKFHMNEHVNEKPYKCDVCQRSYSHKCNLRYHMNVHMGVQFTCEICQKSFTQESRLSNHMNKKHFSVKRYECDVCQNSYYQLSSLKRHILTHTGEKPHKCQICEASFAQIPSLQRHIRLHTGEKPFKCEICETSFIENSKLLRHIQKIHTHDKPYKCESCKSSFIRKSDLHRHIRIHTDKYLLLNQDICRAKMIDITLDQILPSSEITESIENTRTPNEHNYAKTPPKQKKELKIIELKAIYNCRCCGYRTMNRELLSRHPCPKQTIDTKKNSQHYNNTDGYLHCKKCSYFNKSKTNLKIHMNIHTKGNPYKCTECDFAGEDLKKLLKHYEVTKDLVCQCGYTTHFKQQMVVHKRVHTAKNLYRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-