Ppra064287.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621264.1:13783607-13787510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.072 12 8.6 0.6 2 19 11 28 10 31 0.93 2 24 0.003 0.49 12.9 3.1 1 23 78 101 78 101 0.95 3 24 0.21 33 7.1 0.1 2 23 130 152 129 152 0.96 4 24 0.0013 0.21 14.1 0.1 1 23 175 198 175 198 0.97 5 24 0.0001 0.016 17.5 2.3 1 23 203 226 203 226 0.94 6 24 0.00057 0.093 15.2 0.2 1 21 232 252 232 255 0.91 7 24 0.00026 0.041 16.3 0.9 2 23 261 283 260 283 0.95 8 24 2.2e-05 0.0036 19.6 3.3 1 23 287 310 287 310 0.97 9 24 0.027 4.4 9.9 0.8 2 23 317 338 316 338 0.96 10 24 0.16 26 7.5 1.6 1 23 386 408 386 408 0.96 11 24 0.088 14 8.3 0.0 3 23 437 458 435 458 0.90 12 24 0.00023 0.038 16.4 0.7 1 23 478 501 478 501 0.98 13 24 0.00017 0.028 16.8 0.5 1 23 506 529 506 529 0.96 14 24 0.00094 0.15 14.5 1.0 1 23 534 557 534 557 0.96 15 24 7.6e-05 0.012 17.9 0.7 2 23 560 582 560 582 0.97 16 24 0.0081 1.3 11.6 0.5 2 21 590 609 589 610 0.93 17 24 0.0079 1.3 11.6 0.9 1 23 663 686 663 686 0.95 18 24 0.38 62 6.3 0.0 2 23 759 782 758 782 0.95 19 24 5.1e-06 0.00082 21.6 0.2 3 23 789 810 788 810 0.94 20 24 0.0036 0.59 12.7 2.9 2 23 815 837 814 837 0.94 21 24 0.042 6.9 9.3 4.8 1 23 842 865 842 865 0.96 22 24 0.00012 0.019 17.4 5.1 1 23 869 892 869 892 0.97 23 24 0.00051 0.083 15.3 0.3 2 23 899 920 898 920 0.96 24 24 5.9e-06 0.00095 21.4 0.6 1 23 926 948 926 948 0.98
Sequence Information
- Coding Sequence
- ATGAAATGTGATCATGACTCGGAATATACAGAATGTGGATTTTGTCACAAAACTCTTACTACAAAACAAGCATTTCTAAGACACGCAGCAAATTGTAAACAAGATACTAAAGAAGAAACTATAGTGATTGAGGAAGATGAAAAGAAACAAACAGTTCAAGAAATAAGAGACAGTATTGCTTGTATATTTAACAATACTACTGCTTTGCCTTTCAAATACTTCATGAATCGATTTCGATGTTTCTACTGTTCAAAGGATTTTACCAACTGTGACGATATGAAACTCCATATAGTTTCCGATCATCCTATATGCGACACTACGTTCAAATCGATGAAATTGAGGAATCGATATGATGGCGTCCAAATTAAAGTCGATACATTTAATCTGTCATGCAAAATTTGCTATGAGACTTTGCAGGATATAAACGATTTAATACAACATTTGAGCACTGAGCACAAAATAAAAGCAAGAATTGATAACATTCAAAGTAACATACAGGATTTCAAACTCATAAACGATAACTTTCCTTGTCCGTTTTGTGGAGTCATCTATAGATATTTTGGTTTATTGCTGAAACATATAAGTACGGGTCACACAGATAATAAGCATATTTGTGTTCATTGCGGGAAATCTTTCCGTACTGATCCGAATTTACGCGCACACGTTTCCAGACGCCATCAGGATGCAGGGAACTTTAAATGTGATTACTGCGATTTACTTTTTACTACCAACAATGCCTTAAAGATCCATTTAGGTGGTGCCCACGGCAACAAAGTTATCAAATGTGGGCAATGCTCTGAAAAGTTCACTTCTCAGTATTGGATGCAACGCCACATGTTGAATTCTCACGGTATCGGACACAAATGTTCGTATTGTGGCAagtcttttattaaaaactcCTTTATGGTCAACCATATTAGGAGGTTGCATCTAAAAGAGAAGAATGTCGAATGCTCTGTGTGTTTCGAAAAGTTCTTTGATTCGCAAAGATTGAAGATGCATATGGTGAAACATATAGGAGAAAGGAATTACCATTGTGATTTATGCGATGAACAGCCCGGACCCTACGAGGGCTGTACCTCTGAGAAGAGACGGAAAAACTTGAAAGTAATGTTCAACCACACCACAATAATGCCATTTAAGTGGCGAGGCAAATACATCTGTTTTTACTGCGGAAAAAACTATTTGGAGTATCCAGACTTCAAAAAACATACTCAATCACATGGCCCTTGTACAACGAAAGACTACTCTCTAAAAATCGTTAAAGGAAAGAATTCCGAAATTAAACTTGATGTCTCGGTAATCGCTTGTGACATCTGTAATGAGCCTTTTAAACGAGTTGAGGAGATAATAGATCACTTGATTGGGAAACACAATTTGGAGTACGACAAGAATATCGAAATACCTTTCCAAGAATATCGGTTAACAGATTTTCGGTGTTTGTACTGTGAGGAACAGTTCACTTACTTCGGGAATTTGGTGCGACATGTAAATACTATACATCCGCAGAATTGTTTTATATGCGACGATTGTGGTGTCACGTTTAACAAGAAGAGAGATTTGGCCATACACTTTAGGAACTACCATAGACAAGGAGGTTATCCTTGCAACTTATGTTTGCTGAACTTCGAAACCCAGCAATCCTTGCGGAGACATCAAAACAATACGCATTTCAGACAATGTAAAAACTGCGGATTGAAATTTGCGTCTCTAACATTACTACAAAAACATATGGAGCGGGAACACCCCCAATGTGAGGGGAACATAGTATGCAACTACTGTTCAAAAGAATTTCATACGTCATTAGGTTTACGGCAACATATAAGCAAATGCAAAGTCAAAATGATATCTCAAATCCTTCCCAATACTTCGCTATCCGATGACAATTTAGAACCTAAGAAAAAACAGAACCTTCTCCAAATACGGCAAAATATTCTTACTGTCCTCAACATGTCCACAGCAATACCATTTAAATTCTTCTCCAAATATTCCTGCTTCTATTGTTCAAAGAAATTCGTCGAAATTGACGAACTTCGGTACCATACTGGTACTGATCATCCCGTTTGTGATTTAAAGTCGAAATGCATGAAGAAATGTAAAGGAGAAAGAATCTCCGTAAAAATAGACATCTCAAGTCTCGCCTGCAAAATTTGCTGTCTTCCGATGCCCGATTTAGATAACCTAGTCAACCATTTGATTGGAGAACATAAGGCGAATTACGACAAATCAATAACTGGTTGCTTAGAACCTTATAAAGTTATCAAGGATAACATGCCTTGCCCTATCTGTCCAGACCGTGTATTCCGCTACTTTGGAATTTTACTCCGACATATGAATTCAGAACATAGCAATAATAACCGTATTTGCGACTTCTGCGGCCGCAGTTTTAGAAATGCATCCAACCTTAACGTCCATATCACTTATGCCCATACAGGATCTTGCGAGTGTGATATCTGTggtgttaaatataaaaaccaatGGTGTTTAGCGAGGCATAGAGCTAAAACACATGACGCGAAAGATCACAAGTGTCCTAAATGTCCAGAACTGTTCCAATCCCAATACCATAAACAGAAACACTTAATAAAAAGCCATAATATCGGTCATAAATGCAGTTTTTGCGGCAAAATGTTTACAAGAAACTCTTTTATGAAAGATCATGTGCGGCGGACGCATTTGAAGGAGAAAAACGTGCCTTGTTCCGTTTGTAATGAGAAGTTCTTTGACAACTATCTGTTGAGAATGCATATGGTGAAGCATCAAGGTGATAGGAAGTTTAGTTGTACTGTCTGTGGCAAAGCTTTCTTGAGGAAGAGTAATTTGAGCTCCCATATGGAGATGCATAAGAAGTATGGACATGTGCAGTTGTAA
- Protein Sequence
- MKCDHDSEYTECGFCHKTLTTKQAFLRHAANCKQDTKEETIVIEEDEKKQTVQEIRDSIACIFNNTTALPFKYFMNRFRCFYCSKDFTNCDDMKLHIVSDHPICDTTFKSMKLRNRYDGVQIKVDTFNLSCKICYETLQDINDLIQHLSTEHKIKARIDNIQSNIQDFKLINDNFPCPFCGVIYRYFGLLLKHISTGHTDNKHICVHCGKSFRTDPNLRAHVSRRHQDAGNFKCDYCDLLFTTNNALKIHLGGAHGNKVIKCGQCSEKFTSQYWMQRHMLNSHGIGHKCSYCGKSFIKNSFMVNHIRRLHLKEKNVECSVCFEKFFDSQRLKMHMVKHIGERNYHCDLCDEQPGPYEGCTSEKRRKNLKVMFNHTTIMPFKWRGKYICFYCGKNYLEYPDFKKHTQSHGPCTTKDYSLKIVKGKNSEIKLDVSVIACDICNEPFKRVEEIIDHLIGKHNLEYDKNIEIPFQEYRLTDFRCLYCEEQFTYFGNLVRHVNTIHPQNCFICDDCGVTFNKKRDLAIHFRNYHRQGGYPCNLCLLNFETQQSLRRHQNNTHFRQCKNCGLKFASLTLLQKHMEREHPQCEGNIVCNYCSKEFHTSLGLRQHISKCKVKMISQILPNTSLSDDNLEPKKKQNLLQIRQNILTVLNMSTAIPFKFFSKYSCFYCSKKFVEIDELRYHTGTDHPVCDLKSKCMKKCKGERISVKIDISSLACKICCLPMPDLDNLVNHLIGEHKANYDKSITGCLEPYKVIKDNMPCPICPDRVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNASNLNVHITYAHTGSCECDICGVKYKNQWCLARHRAKTHDAKDHKCPKCPELFQSQYHKQKHLIKSHNIGHKCSFCGKMFTRNSFMKDHVRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHQGDRKFSCTVCGKAFLRKSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -