Basic Information

Insect: Pseudoips prasinana
Gene Symbol: -
Assembly: GCA_951640165.1
Location: OX621264.1:4566642-4568204[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3e-05 0.0049 19.2 2.4 1 23 22 44 22 44 0.98

2 17 6.3e-06 0.001 21.4 1.5 1 23 50 72 50 72 0.98

3 17 7e-07 0.00011 24.3 3.4 1 23 78 101 78 101 0.97

4 17 6.4e-05 0.01 18.2 1.5 1 23 107 129 107 129 0.99

5 17 0.0015 0.24 13.9 5.4 1 23 149 171 149 171 0.96

6 17 4e-05 0.0064 18.8 2.8 1 23 177 199 177 199 0.99

7 17 3.5e-05 0.0057 19.0 3.8 1 23 205 228 205 228 0.98

8 17 7.6e-05 0.012 17.9 0.9 1 23 234 257 234 257 0.98

9 17 0.014 2.3 10.8 2.7 1 23 263 285 263 285 0.97

10 17 3.3e-05 0.0054 19.1 6.5 1 23 291 313 291 313 0.99

11 17 2.8e-06 0.00045 22.5 2.2 1 23 318 341 318 341 0.98

12 17 1.6e-05 0.0026 20.1 0.8 1 23 347 369 347 369 0.99

13 17 3.8e-05 0.0061 18.9 0.4 1 23 375 397 375 397 0.98

14 17 9.5e-06 0.0015 20.8 0.5 1 23 403 426 403 426 0.98

15 17 1.2e-05 0.002 20.4 3.3 1 23 432 454 432 454 0.99

16 17 7.8e-06 0.0013 21.1 3.8 1 23 460 483 460 483 0.98

17 17 0.026 4.2 10.0 4.3 1 23 489 511 489 511 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3e-05	0.0049	19.2	2.4	1	23	22	44	22	44	0.98
2	17	6.3e-06	0.001	21.4	1.5	1	23	50	72	50	72	0.98
3	17	7e-07	0.00011	24.3	3.4	1	23	78	101	78	101	0.97
4	17	6.4e-05	0.01	18.2	1.5	1	23	107	129	107	129	0.99
5	17	0.0015	0.24	13.9	5.4	1	23	149	171	149	171	0.96
6	17	4e-05	0.0064	18.8	2.8	1	23	177	199	177	199	0.99
7	17	3.5e-05	0.0057	19.0	3.8	1	23	205	228	205	228	0.98
8	17	7.6e-05	0.012	17.9	0.9	1	23	234	257	234	257	0.98
9	17	0.014	2.3	10.8	2.7	1	23	263	285	263	285	0.97
10	17	3.3e-05	0.0054	19.1	6.5	1	23	291	313	291	313	0.99
11	17	2.8e-06	0.00045	22.5	2.2	1	23	318	341	318	341	0.98
12	17	1.6e-05	0.0026	20.1	0.8	1	23	347	369	347	369	0.99
13	17	3.8e-05	0.0061	18.9	0.4	1	23	375	397	375	397	0.98
14	17	9.5e-06	0.0015	20.8	0.5	1	23	403	426	403	426	0.98
15	17	1.2e-05	0.002	20.4	3.3	1	23	432	454	432	454	0.99
16	17	7.8e-06	0.0013	21.1	3.8	1	23	460	483	460	483	0.98
17	17	0.026	4.2	10.0	4.3	1	23	489	511	489	511	0.96

Sequence Information

Coding Sequence: ATGAAGCAGCGCATGAATGATGTGGAATCTGATGAAGATAATTTGAAAAGTGCCGACAAACCTTATCGATGCGATCTTTGCCAAAGAACATTTAATCATAAAGGCAGTTTGGTGAGACATAAAATCATTCATACTGGTCTAAAACCTTACAAATGTCTTAGGTGTCCTAGAAGCTTTAGCGACAGAAGCACATTGAAAGCACACAGCCGTTTGCATACGGGCGAAAAACCTTTTAAATGTGAGATTTGTCATAAAAGCTTCGTCCAAAACTGTAATCTTATCAAACACATACGCGGAGTACACAGCGTACTAAGACCTTACAAATGCGATATGTGCCAGAGTAGTTTCAGTAAAAAGCGTACTTTAGTACTCCATATGAATATCCACATGCCAAAAGACGTGTCTGACGACAATAATGCAAACAAAGACGTAAACGAGAAACCTTATAAATGTGACACTTGTGATAGTAGTTTTCGTCACAGATGTAATTTGGTGCGACACAAAGTCATTCATACTGGCCTCAAACCTTACAAGTGTCATAGCTGTCCTAGTAGTTTCAATGACAAGAGCACTTTAGATAAACACATTCGGCTACACACTGGCGAGAAACCTTATAAATGTGACATTTGCCAAAGAAGCTTCACTCAGAGTAGTAATTGTGAGAAACATAAGCGCGTAGTACATTTAAATGAAAGAGATTTTAAGTGTGAAACGTGTCAGGCAAGTTTCACACTACGTAGCCGGCTGGAAAACCACATCAGAGTCACGCACACAGACAAAAAGCTTTACAAATGTGAGGTGTGTCACAAGGACTTTGATGGTATTGGCCATTTGAAGTTCCATATGAATGAACATGTCAACGAAAAGCCTTACAAATGCGACGTTTGCCAGAGAAGTTACAGCCACAAGTGTAACTTAAGATATCACATGAATGTACATATGGGTGTCCAATTTACATGTGAAATCTGCCAGAAAAGCTTCACGCAAGAGAGCCGCTTGTCAAATCATATGAACAAAAAGCATTTCAGTGTCAAACGGTACGAGTGCGATGTTTGTCAGAACTCTTACTACCAACTCAGCTCTTTGAAAAGACATATTCTCACTCACACGGGTGAAAAACCCCATAAATGTCAGATTTGCGAGGCTAGCTTCGCTCAAATACCCAGTTTACAAAGACACATCCGATTGCACACTGGCGAGAAACCATTCAAATGTGAAATTTGCGAGACCTCTTTCATAGAAAACAGCAAACTTTTAAGACACATCCAGAAGATACACACCCACGACAAGCCTTACAAATGTGAGAGCTGTAAAAGTAGTTTCATTAGGAAGAGTGACTTGCATAGACATATTCGCATACATACTGGTGAGCAAGCTTTTAAGTGCGATAAGTGTGAGAGTAGTTTTAGCCATAGTAGTAGTCTGAAGACGCATATTCGCGTCAAGCATAACGGGGAAAAGCCTTATAAGTGTGAGGTTTGCCAGTACAGGTTCACAGCCAAATCTAGTTTAATGTGCCATCTGTACAAACACAATATACAAGATGTTAACTTAGTTGTTTGA
Protein Sequence: MKQRMNDVESDEDNLKSADKPYRCDLCQRTFNHKGSLVRHKIIHTGLKPYKCLRCPRSFSDRSTLKAHSRLHTGEKPFKCEICHKSFVQNCNLIKHIRGVHSVLRPYKCDMCQSSFSKKRTLVLHMNIHMPKDVSDDNNANKDVNEKPYKCDTCDSSFRHRCNLVRHKVIHTGLKPYKCHSCPSSFNDKSTLDKHIRLHTGEKPYKCDICQRSFTQSSNCEKHKRVVHLNERDFKCETCQASFTLRSRLENHIRVTHTDKKLYKCEVCHKDFDGIGHLKFHMNEHVNEKPYKCDVCQRSYSHKCNLRYHMNVHMGVQFTCEICQKSFTQESRLSNHMNKKHFSVKRYECDVCQNSYYQLSSLKRHILTHTGEKPHKCQICEASFAQIPSLQRHIRLHTGEKPFKCEICETSFIENSKLLRHIQKIHTHDKPYKCESCKSSFIRKSDLHRHIRIHTGEQAFKCDKCESSFSHSSSLKTHIRVKHNGEKPYKCEVCQYRFTAKSSLMCHLYKHNIQDVNLVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -