Ppra054156.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- JRKL
- Assembly
- GCA_951640165.1
- Location
- OX621259.1:6904558-6906636[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.6e-07 0.00025 22.7 0.1 11 40 34 62 29 65 0.86
Sequence Information
- Coding Sequence
- ATGATAACCGTTGCTTTTTTCGTTCTAGATGCCCAGACAACGTATAAAAAAACTTCAAGAGGCGAGTGTGATATAACTCAGTACGAAAATGCGTATGAAGAAGTCAAAAAAGGGACTTCTTTACGAAAAGCTGCAGAGATGTACGGAGTTCACCATTCTTCTCTTCTGCGATACAAGAAAAAAAGAGATGCAGCGATCGAAGAAGGTAACCAGGCTGATGTTAGTATGGGGTATGTAGCCCACAACCGAGTATTTACCCCTTACCAGGAATTTAAACTGTCAAAATATTTGATCCGCTGTGCGGATATTTACTTTGGTCTATCTGTCAAGGAAGTAAGAAAATTAGCATTCCAGCTCGctgtcaaatataatttaaacacaCCTCCTACGTGGAACGAAAATCAGGTTGCCGGAGAAGAGTGGTTTCGctcttttatgagaagaaatGTGGAATTGTCGGTGCGCACAGCTCAGGCAACCAGTCTCTCCAGGGCAACAAGTTTTAACAAGACCAACGTGGATGCTTTTTACGATCACTTGCAAGTTGTCCTTGACCGTGACAACTTTGAACCACAAGACATCTACAATGTTGACGAGACGGGCGTAACAACTGTACAAAAGCCCGACAGAGTTGTGGCAAAGCGTGGAACACGACAGGTAGGAGCTGTCACCTCTGCCGAACGTGGGACGTTAGTCACACTAGCCTTTGCGGCAAACGCGTTGGGCAATGCGATTCCCCCAATGTTTGTGTTTCCAAGGGTTCGATACCAAGATCATTTTATTAGAGATGGTCCAGTGGGTTCTATTGGAACTGCCAACCCATCAGGCTGGATGCAAGACGAACTATTTGTTGAGTTTCTGAAACATTTCAAGAAACATTCAAATGCCTCTACATCCCATAAAGTACTGCTTGTTCTAGACAATCATTCTTCCCACGTCCACATAAATTCTCTGGATTTCTGCAAAGAAAACGGTATCGTTTTACTTTCATTTCCACCCCACTGCTCGCACAAGTTGCAGCCTTTAGATCGATCTGTTTACGGCCCGTTAAAAAAAGCTATAAACTCTACCGCTGATGCCTGGATGCGCAATAATCCTGGAAAAACTATGTCCATTTATGATATCCCTGGAATGATAAAAACTGCAATGCCACTTGCCCTGACACAGTCGAATATTCAGGCTGGGTTCCGTAAGACTGGAATATACCCTTTCAACCGGAATTTGTTTCAAGATCTGGATTTTGCTCCGTCATTCGTAACGGACAGGCCAAACCCGAATGATGCGGTAGAAGACGTGGTTACACTTGCACCAGTGGAGGTAATCGCACTTGCACCGGaagaaatagttgttctagcACCTGACGAGGAGACGCCACCGCTGTCACCTTCCTTGTTGAACGAAGCTTCTATGTCTGAAAACGTGCCACAACACGTAGCCCCGATACAGAATACAGAGACTAATATCCCACAAAACTTTGAAGATTTAACGACGCCGCCCACACAAAGTTGTGCAGGTGTACGTCATCAGTTACAAGACACAGCTATACAACCGGAATCAAATATTTCTCCTAGAGATGCTACTGCTGCTCTGAGGTTGCCTTCTAGCCAAAGTTACGTCAGTCTTCAACAATCATCACCGCAGCCGTCTACAAGCAAACAACCTGTGTTTACACCTGAAATAATACGGCCATATCCAAAAGCTGCCCCCCGGAAAACAACAAATAAAGCTCGTAACACAAAAAAGTCTACTATTTACACAGACACTCCGGAAAAAGAAGCTATAAGAAAAGAACATGAAGATAGACAGAAACGACAAAAATCTAAGCAGATAAAGAAGAAAATACTTGAAGATACTACAGCGAAGAAGTCTAAAGGTAAAGCAAAGAAGAAGAAGGCCGATTCACCAGCTTCATCGGAAGAAGATGAATATTTTTGCCTCATATGTGTGGGAGCGTTCACGGACAGTAGATCCGGAGAAAAATGGGTACGATGTCAAGGAGGCTGTAAAATGTGGTCTCACTTAGAATGTACAGATGGTGGGCGATATTATGTTTGCCACAATTGCGACGAATCTGATTAG
- Protein Sequence
- MITVAFFVLDAQTTYKKTSRGECDITQYENAYEEVKKGTSLRKAAEMYGVHHSSLLRYKKKRDAAIEEGNQADVSMGYVAHNRVFTPYQEFKLSKYLIRCADIYFGLSVKEVRKLAFQLAVKYNLNTPPTWNENQVAGEEWFRSFMRRNVELSVRTAQATSLSRATSFNKTNVDAFYDHLQVVLDRDNFEPQDIYNVDETGVTTVQKPDRVVAKRGTRQVGAVTSAERGTLVTLAFAANALGNAIPPMFVFPRVRYQDHFIRDGPVGSIGTANPSGWMQDELFVEFLKHFKKHSNASTSHKVLLVLDNHSSHVHINSLDFCKENGIVLLSFPPHCSHKLQPLDRSVYGPLKKAINSTADAWMRNNPGKTMSIYDIPGMIKTAMPLALTQSNIQAGFRKTGIYPFNRNLFQDLDFAPSFVTDRPNPNDAVEDVVTLAPVEVIALAPEEIVVLAPDEETPPLSPSLLNEASMSENVPQHVAPIQNTETNIPQNFEDLTTPPTQSCAGVRHQLQDTAIQPESNISPRDATAALRLPSSQSYVSLQQSSPQPSTSKQPVFTPEIIRPYPKAAPRKTTNKARNTKKSTIYTDTPEKEAIRKEHEDRQKRQKSKQIKKKILEDTTAKKSKGKAKKKKADSPASSEEDEYFCLICVGAFTDSRSGEKWVRCQGGCKMWSHLECTDGGRYYVCHNCDESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264555;
- 90% Identity
- iTF_01264555;
- 80% Identity
- -