Ppra054318.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621259.1:10339228-10340670[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-08 9.1e-06 27.3 0.1 2 39 16 54 15 58 0.86
Sequence Information
- Coding Sequence
- ATGGTTCGTACCTACAAAAGAAAAACGAATCGACAAAAATGGGACGAGGCAGACATGAGAAGAGCAGTGTCGGCTGTGCTTCTCAATAGAATGGGGTTTCTCAGGGCTTCTGCTACTTATACTGTGccaaaatcaactttagaacgACGAGTAAAAAAAGCTCGCCTGTCTCAGAATGCAGATacaaattcagaaaatgacTACGGGAAAAAAGGTTTAGGGCACTTCAAACCAGTGTTTACAAAAGAGCAAGAAGAAGAGTTGGCCACTTATGTAAAAATGATGCAATCCCGATTATTCGGAATTACTGGGACAGAGCTAAGGATACTAGCTTTCCAACtagctataataaataatatcgagAATCCCTTTAATCGAGAAGATGATATGGCAGGGAAAGACTGGCTTAGTGGGTTTCTAAAACGCCGTTCAGATATATCATACAGGCAACCAGAACCAACTTCTGCGGTTAGGGCGATGGGATTTAATAGAATCGCTGTAAATAGCTTTTATGATCTATTAGAAAGTGTTGTGGATAAACATGCACTGACTGCAGATAGAATGTATAACGTGGATGAAACGGGTATTAGCACTGTGCCGAAAAGTCAGTCCAAAATTTTATCTCTGAAAGAACAGAAGCAAGTTGGATGTCTAACATCAGGAGAAAGAGGCCAGCTAGTGACAGCTGAAATATGTTTTAGTGCGACGGGAGTATATTTGCCACCAATGCTAATTTATGCCAGGAAACGCATGAAGAATGAACTTCTAGATGGTGCACCAGCCGGCTTTTGGGGAACCTGCAGCGACAATGGCTGGATAACTTGCTCAATTTTTTTCGATTGGTTCAAACGTTTCGTGGACTTTACAAAGCCTTCTAAAGACAAACCAGTTTTGCTTATGTTAGACGGCCACGTGTCCCACACCAAAAATCTGGATCTCATAGATTATGCCAGAGAAAACAATGTTATATTATCGTGTACACCGCCACATTGCACTCATAAACTTCAACCCTTGGACGTGTCCTTCATGCGGCCACTAAGCACATTTTACAGTGCTGAAGTAAAAAAGTGGTTAAGAGATCATCCCGGACGCGTAGTAACTTCCTATCAAGTTGCAGACCTTTTTGGAAAAGCTTTTAAACAAGCATCAACCATGAGCACTGCTATAAATGGTTTTAAAAAATGTGGCATATGGAATGTTTTCACAGAAGCAGATTTTATAGCTGCGGAAACCACCAACACTGAGACCCTTGTCATTGAAGGCTTAAATGCGCATAATGCAGGAGACGTACCAACAGCATACTGTGAACCTTCATCGTCAGGAATTTCACAAGCAGTTCAATTAAATATGTCTATTTTAAACCTCGATGAAAACATTTCTGAACCAATCATACCCGCCGCCgcaaattttaaaagaaaagagtTCATTTACAGTTACACCTGA
- Protein Sequence
- MVRTYKRKTNRQKWDEADMRRAVSAVLLNRMGFLRASATYTVPKSTLERRVKKARLSQNADTNSENDYGKKGLGHFKPVFTKEQEEELATYVKMMQSRLFGITGTELRILAFQLAIINNIENPFNREDDMAGKDWLSGFLKRRSDISYRQPEPTSAVRAMGFNRIAVNSFYDLLESVVDKHALTADRMYNVDETGISTVPKSQSKILSLKEQKQVGCLTSGERGQLVTAEICFSATGVYLPPMLIYARKRMKNELLDGAPAGFWGTCSDNGWITCSIFFDWFKRFVDFTKPSKDKPVLLMLDGHVSHTKNLDLIDYARENNVILSCTPPHCTHKLQPLDVSFMRPLSTFYSAEVKKWLRDHPGRVVTSYQVADLFGKAFKQASTMSTAINGFKKCGIWNVFTEADFIAAETTNTETLVIEGLNAHNAGDVPTAYCEPSSSGISQAVQLNMSILNLDENISEPIIPAAANFKRKEFIYSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124189;
- 90% Identity
- iTF_01264464;
- 80% Identity
- -