Basic Information

Insect: Pseudoips prasinana
Gene Symbol: MSL3B
Assembly: GCA_951640165.1
Location: OX621253.1:13797121-13812429[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-08 3.5e-06 28.6 0.0 3 37 17 52 15 56 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-08	3.5e-06	28.6	0.0	3	37	17	52	15	56	0.90

Sequence Information

Coding Sequence: ATGGATCGTGATTATAAAAGGACGACTAATAGACAATCGTGGGACACGGAAAACATGAAAAAAGCTGTTCAAGCCGTGTTTGGTGGGACTATGGGATACTTCAAAGCTGCTCAAATATATCAGGTGCCGAAATCCACCTCACAAGATCGCGTTAATAAATTCCgacaaaataatgatttaaacaAATCAACTCTTAAAGGCCTGGGGCGTTTTAGGCCAACTTTTACAACTACTCAGGAAAAAAGTTTGGTTGACCACATCTTAATTATGGAAAAACGATTATTTGGTCTCACTTATAAAGATCTTCGACGGTTAGCGTACCAGCTTGCAGAAGCTAATAATATTGACCATTCTTTTAATACAACTACTAAAGAAGCGGGAGAGGATTGGCTGTCAGGATTTATGAAATGCCACCCACAATTATCACTGCGTGCAGCTGAACCCACGTCCGTGGCAAGGGCAATGGGATTTAATATGGTCAGTGTTAATAAATTTTTTGATTTGCTTGAGGAACTCATAGATCAACACAAATTTCTACCTACAAAGATATATAACGTTGATGAAACGGGTTTGACGACGGTTCCTAAAAGACAAAGTAGGATAATCGCCTTAAAGGGAAAAAAGCAGGTCGGCCTGGCCAATTCAGCGGAAAAAGTCAACTTAGTACTGCTGTACTTCGTTTCCAGCTGGCTTTTTGGTGCAGCTTATGGTAAAGCGGCTACGATACATAATGCAGTATCTGGATTTTTGAAAACCGGCATTTACCcgacaaatagacatgtattCGATGAAACAGATTTTGTTGCGGCTGAAACTACGGATATACATGCGTTAACACCTTCAACTTCTACTACAACAGTTACATGGGAGCCCTCAACATCGTCTACGCTACTTGCTAATGCGATTCCATCAACCACTAGTGGACAAATCGACCCGGTGAAATCATCTTCTAATGCGTCTGTCATAAACTTGGTACAATCCGCTTCATCCACCTCTTTAATTGAACCAACACCGTCTACTTCTATTGCTTTTGATCAAGACTTTGAAGCTGTATCTCCGGCAGATGTAATGCCAATCCCTAGAGTTAGTGTGAGTCAGAAAAGGACAAACAATCGAAGAGGGAAAACAGCTGTCATCACTTCCTCTCCCTACGAAAACGTACTGATTACCTCACAATATAAAATACCAAAACTTAATCTAGATCaccaaaagaaaactaaaaaacaaacaactacCAATGGCAACGATGACTGTCTGTACTGTCTTGAGAAATACGGCACTACTCGATTGAATGAACGTTGGGTCCAATGTATAGAGTGCAAAGGTTGGGCTCATGAAGGCTGCACAGGTTACGATTCAGAAGAATTGGATGATTTTGTGTGCATGGGCTGTATAGCTGCACAAGGTGAACCGCTTTTAGAAGGAGAAACGGGCGACACTGATTCGTCGTCTGGGTCGGCGTCCAGCTCCCAGCCACACTCGCCGCCGCCCACCGTGCAGGTCGGGAGAGCTCACATCGCTCTACCATCTGCCCTCAGGGATCGCTTAACATTCGACTACCACCTAGTGGTCAAGCGTGGCCGGCTGTCGCAGCTCCCTGCCAACCCGTGCGCGGCGGAGATCCTCGAATCTTTCGTCAAGTGGTTTGCGCGAGCCGGCGCCTGGCACCCAACTCGGGGCCGACACGACCCGCCTCAGAAGCCCGACTTGCTTGATGTGTCTTGCAGGTTGAATTTGGTACGCGAAGTGGCTGACGGACTGCGTGTTTACTTCGACTTCATTCTGCGCGGCCAGTTGCTCTACAAGCAAGAGCTCAACCAGTATTTTGAGATCTGTGGAAAAGTCGTCGACGAGCAAGAAGAAATGCGCAAAATGCACTTGGAAGAGGGTGAATATGAAGAAGAACAAGAATGCGCTGAGGAGGGCAACCTGGCCGCCATGGAGGAGGACATGAAGAGTCCCAAGATACCGGAATACTCGCACTTGCCACCAGACCCCGTCGAAGCCGGAGAAAGGGAGGAGTCTGAGTTTATCAGTCACGATGAAGTTTTAAAGATGGATGCCACAGACAAACCGGTTAAGAGCGAACCACGAAGCGAGGCCACGGACGAGAACAACGCCGGGGGAAGCAAGAGTCGCGATGGAGCATCCGCTCCACCCAGTGGCAACGTGGCACGAAGGCTCCGCTCTCACAAATCAGCGGTATCTCAGTCGGAAAATGAGGAGCCACTCCCATCAACGTCCACTGGCGAACCGCGGACATTCGAGACGCTTTCGTCCAGCGTGGGCAGCAGCGGCTCGTCCATCAGCGAGTGCTGGGCGCGCCCCGCCGTCAGCCACGCCGCGCCCACCACCACCAGGACCCCGCTCTCGCTGCTGCTCGACAAAGTGGCCAAGTGGCAGATCATTCCACGCGAGGGCACTGAACATCTGCCATGCCGTGTCTATGGAGCCATCCATCTTGCCAGACTATTTGTGAAATTGCCAGACTTCTTGAACTCAACTCAGATGCCCGATTTCAAATTGAAACTGATCTTGAAACACATTGATATGTTCATTCAgtACTTGGAAGAACACAGCGAGTGGTTCGGCGAGATGTACTACATATCAGACAACGTGTCGCGCTCACATTAG
Protein Sequence: MDRDYKRTTNRQSWDTENMKKAVQAVFGGTMGYFKAAQIYQVPKSTSQDRVNKFRQNNDLNKSTLKGLGRFRPTFTTTQEKSLVDHILIMEKRLFGLTYKDLRRLAYQLAEANNIDHSFNTTTKEAGEDWLSGFMKCHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLEELIDQHKFLPTKIYNVDETGLTTVPKRQSRIIALKGKKQVGLANSAEKVNLVLLYFVSSWLFGAAYGKAATIHNAVSGFLKTGIYPTNRHVFDETDFVAAETTDIHALTPSTSTTTVTWEPSTSSTLLANAIPSTTSGQIDPVKSSSNASVINLVQSASSTSLIEPTPSTSIAFDQDFEAVSPADVMPIPRVSVSQKRTNNRRGKTAVITSSPYENVLITSQYKIPKLNLDHQKKTKKQTTTNGNDDCLYCLEKYGTTRLNERWVQCIECKGWAHEGCTGYDSEELDDFVCMGCIAAQGEPLLEGETGDTDSSSGSASSSQPHSPPPTVQVGRAHIALPSALRDRLTFDYHLVVKRGRLSQLPANPCAAEILESFVKWFARAGAWHPTRGRHDPPQKPDLLDVSCRLNLVREVADGLRVYFDFILRGQLLYKQELNQYFEICGKVVDEQEEMRKMHLEEGEYEEEQECAEEGNLAAMEEDMKSPKIPEYSHLPPDPVEAGEREESEFISHDEVLKMDATDKPVKSEPRSEATDENNAGGSKSRDGASAPPSGNVARRLRSHKSAVSQSENEEPLPSTSTGEPRTFETLSSSVGSSGSSISECWARPAVSHAAPTTTRTPLSLLLDKVAKWQIIPREGTEHLPCRVYGAIHLARLFVKLPDFLNSTQMPDFKLKLILKHIDMFIQYLEEHSEWFGEMYYISDNVSRSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -