Ppra041254.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621253.1:539738-541938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-09 1.4e-06 29.8 0.0 1 38 15 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAGTCAAAACCTAGAAAAAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGcagtacaaaataataaacttaatacaAATGCTGCAGCGATAAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATATATTGAGCGGTAACAGTGCTAAAATTATTGGGAAGACGACTATTCTCACAAAACAATTAGAAGAAGATTTATCGCAGCGAATCATACGAATGGCTGGACGCAAATGGCTTACAATGTTTTTATCTCGAAACCCATCAATATCAAAAAGAAAACCCCAGTTAATGAATCCAGCTAGAGCTCAGAAAATGAATAAGCCTATTGTTAAACACCACTTTGAAGAAGTGAAAAAACTCTATGAAGAGTTATATATTATTGCACATCCAGAACGTCTGTACAACATGGATGAAAAAGGGTGTCGCATTACGGTCCACAAACAAAATGTAGTTTTGGCTGAAAGGGGAAATAAAAGAGTACATCTTGTTGCTCCGGAACACGCCGAGAACGTAACAATAGCAATGTGCGTAAATGCTGTGGGTACTGCTATACCGcctatgattatttttaaagggaTTAGGCACAGATCAGAATTAGCAGAGAATTTGCCACCTGGAACAAAGGTAAGCATGGCACCCAAAGGCAGCATGACCAGTAGCTTATTCGTAGAGTTCATTGAACATTTAGCACAACATAAAGTATCCGGTAAGTGTCTACTTATCTTTGATGGCGCAAAGTGTCATTTATCATATGAGGCTCTGGAAGTagcagataaaaataatatagtactaTACTGCTTACCTTCAAACACGACGCACGAACTCCAACCTCTAGATAAATCAGTGAATCGGTCCTTCGAACATCACTGGGATGAGGAAGTTCTAAACTACCTGTGCAATTCTCAAGAGAGAACTTTAAACAAAGCTGCATTTAACAAAATTTTCTCCCGAACATGGCCAAAGTGTATGACTCAAACCAATGTAACGAATGGATTTAAAGCCACTGGTTTATACCCCTTTGATCCCGATGTCATACCCGAAGATGCTTATGCACCTTCAATTGTAACTGAAAGACCTTTATCGGAAATGTTACAACACCAGATGGGCCAACCACTTATATCTGTTCAACCTCCTATGTCTGAAGTTAAGAAAGTGTCAGAATTGTCGCCAAAATCTGCAGCTGCAACACCAAAAAGTAAACCAGTTCTTGTTTCTTACAGTTTTTCAAGTGATGATTCAGACTTAGAATTAGGCATTATGGAAAATGATCAGTGCCACCACGTAAGTTCAGTACACGTTGAAACCGACGCAGATACGAAACATAACGCTCAACGATCTCTGTACGATAATCCTCTTCCGAGCACGTCTGGCTTGCAACAAAATATCGTCTGTTCTAGCTCTGAATCTGATCTTGATTTTAATCTTGGTGaatcatttataaaagaaaactacaTGTCTAAACTTCAAGTCTCGGATCTATACAGCTTTTCTACCTCATCTGATGATGATCTCGAACAGAAAGGAGAAATCACTCCAAAAAAACTATTAGTGCAAAACAAAAGCTCAATTAAAACAAAAGCTCAACTAAAGAGTCATGAGACGATATCTTCAGATGATGACGAGCCGTTAATTAAGCTAATAAAGGATAAAGAAGAATCGTTTCATACTTTTTTGCCTACTCCAAATTACGCTACGATAAAGTCTTCACGTCCACGGCAAAAAGCTATTAACTATAAGGGACAACGAATagtaaaagatttatttaaaactggAGATAAAGAGAATAAGATGAAGCAAACGACGAGTAAGAAAAATGGAAAGTCTACAATTAAAAAAGGTCAAAAAAAGaacaccaaaaataaaaatgatccTGTAAAACGGCTTAAAAGAATAgtaccaaaacaaaacaatgaaagATCGAAAATAGAGAAGAAGAAAAGTGCAGAAGATGAAGAGAAGGAGTGGTACTGTCATGCATGTGGCGAGTGTAAAATGAGAGACATGAGGCAATGTACCCAATGTCAAAAGTGGTATCACGAGGAGTGTATGTGTCTCACTAAAAAAGATCTCATATTTATATGCCCAAATTGTGATTAA
- Protein Sequence
- MSESKPRKKRGSTWDEDSLRRAMEAVQNNKLNTNAAAIKFNIPRRTLRNHILSGNSAKIIGKTTILTKQLEEDLSQRIIRMAGRKWLTMFLSRNPSISKRKPQLMNPARAQKMNKPIVKHHFEEVKKLYEELYIIAHPERLYNMDEKGCRITVHKQNVVLAERGNKRVHLVAPEHAENVTIAMCVNAVGTAIPPMIIFKGIRHRSELAENLPPGTKVSMAPKGSMTSSLFVEFIEHLAQHKVSGKCLLIFDGAKCHLSYEALEVADKNNIVLYCLPSNTTHELQPLDKSVNRSFEHHWDEEVLNYLCNSQERTLNKAAFNKIFSRTWPKCMTQTNVTNGFKATGLYPFDPDVIPEDAYAPSIVTERPLSEMLQHQMGQPLISVQPPMSEVKKVSELSPKSAAATPKSKPVLVSYSFSSDDSDLELGIMENDQCHHVSSVHVETDADTKHNAQRSLYDNPLPSTSGLQQNIVCSSSESDLDFNLGESFIKENYMSKLQVSDLYSFSTSSDDDLEQKGEITPKKLLVQNKSSIKTKAQLKSHETISSDDDEPLIKLIKDKEESFHTFLPTPNYATIKSSRPRQKAINYKGQRIVKDLFKTGDKENKMKQTTSKKNGKSTIKKGQKKNTKNKNDPVKRLKRIVPKQNNERSKIEKKKSAEDEEKEWYCHACGECKMRDMRQCTQCQKWYHEECMCLTKKDLIFICPNCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377409;
- 90% Identity
- iTF_01377409; iTF_00928610; iTF_01377410; iTF_01377412; iTF_00654190; iTF_00654192; iTF_01081525; iTF_01081526; iTF_01081529; iTF_01375709; iTF_01375710; iTF_00761599; iTF_00761597; iTF_00761600;
- 80% Identity
- -