Ppra042695.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621253.1:26156804-26157421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-09 6.5e-07 30.9 0.0 5 35 20 50 19 54 0.95
Sequence Information
- Coding Sequence
- ATGGCTCCACGAATACCTATTTCACAAAGGAAGCGGCAGACTTGGTGCAAGGTATCAATGAAAAAGGCAATCGAAGATGTGCGAAATAAGAAAATGGGCTCACTAAAAGCTTCCAAACTGTACAAAGTACCCCGAACAACTTTACGACGTTTGGCAGCTAAATTAGATATACCAGCCGATGTAGCGACTTGTGCGAAATTGGGAAGAAAACCTACATTACCACAAGAATTAGAGAAACAGTTAGTACAGTATGTATTAGCAATGGAAGCTAAGTTGTTTGGTTTAGTACGAAAAGATGTTATGAGTTTAGCCTATCAGctggcaaaaaaaaataatatcatccaTAACTTTTCGGCAAAAAATGAAAGCGCCGGTAAAGATTGGCTAAAATCTTTTTTAGAAAGATATCCGGAACTTTCTTTTCGCCGTCCAACAGGAACTTCATTTGCCAGGGCTAAGGGATTCAATAAAGAAAGTGTGGACCATTTCTTTAACCTTTATGAGAAATTAATGGATGACTACAAGTTCCCTCCAGACAAAATTTTCAATGTGGATGAGACTGGCATAAGTGTTGTTCCATCTCAAATGCCCCAAGTTCTGAGTAAAAAAGGCAAATAG
- Protein Sequence
- MAPRIPISQRKRQTWCKVSMKKAIEDVRNKKMGSLKASKLYKVPRTTLRRLAAKLDIPADVATCAKLGRKPTLPQELEKQLVQYVLAMEAKLFGLVRKDVMSLAYQLAKKNNIIHNFSAKNESAGKDWLKSFLERYPELSFRRPTGTSFARAKGFNKESVDHFFNLYEKLMDDYKFPPDKIFNVDETGISVVPSQMPQVLSKKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264420; iTF_01264395; iTF_00407507; iTF_00407511; iTF_00407512; iTF_00754504; iTF_00006225; iTF_01230485;
- 90% Identity
- iTF_00407512;
- 80% Identity
- -