Ppra064340.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621264.1:14438166-14442618[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.64 1.6e+02 4.1 0.0 18 35 90 107 89 114 0.80 2 2 4.3e-09 1.1e-06 30.2 0.0 3 34 358 389 356 391 0.90
Sequence Information
- Coding Sequence
- atgccttccagaccacggtattctaatcaagaacgccatgaaatggtattgtgctaccgcgagtgtaactctgtaactgcgcatgcagtgaacttataccagcagaggtttggtgtgcgagtgagtcatcatacccttctggatgccgtgtacaggtttagagaacacggccgttttgacccacctccggctgacgcaggcaggcctccatattctgccgaactcgaagaggaagtgttggacttcttccgacatcatcctcttgcgagcaccagagatgctgctcgagtgttcgaagtgagccacgcctacgtgtggcggcttttaaatcgggaagggctccatccgtaccactttacaagagtccaagaactgcatccacctgactacgcggcccgcctcgcgttttgtaattggattacgGAAGAACGACGCAATATTCTGTGGACTGACGAGTCCACATTCACACGGGTTGGTATGTTCAACATACACAATGCGCATTACTGGACTGAGGAGAATCCCCGTGTAGTGCGGCCTGATCACTTTCAGACTCGGTTCAGTGTTAATGTGTGGGCTGGGATACTGGGGAACAGAATTCTAGGACCAGTGTTCTTAGACAGACTGAACGGAGAGACGTATCTGCGCTTACTACAAACCCGTGTAAGAAGAATGTTGGAACGTATTCCTCTTGAAGAGATAAGAGGGCTACACTTTCAACATGACGGAGCACCACCTCATTTCGCCATCAGCGTACGGGAATTTTTAAACGGTGTCTGGTACGGCGGTGAAAGATGGATAGGCCGAGGAGGGCCAGTGCCGTGGCCTCCTCGCTCGCCAGATTTAACCCCtctagacttttttttgtggggtcgtGTAAAGGACCTATTTTACGGCCAAACTGGACATGATATTAGAAGTGTAGGAGAACTAAAAAGGCGAATCAAACGCGCATTTAGACTAGTGAAAAGTGAAacggacacattaaataaagttaagagacatgtacGAACAACCATAGTGCGCAATTACAAAAAGACTCCGGGCACAAGGAATTATAGAAATTACACTACTGAAGTGCTAGAAGAAGCCATTGAAAAAATAACTGACAATGAAATGTCCATAAGTCAAGCTTCACAAACCTACAATATACCATTCGGGACGTTGTATCATCCCGAACTATGGTTGCTATATCTTTCCAATTAA
- Protein Sequence
- MPSRPRYSNQERHEMVLCYRECNSVTAHAVNLYQQRFGVRVSHHTLLDAVYRFREHGRFDPPPADAGRPPYSAELEEEVLDFFRHHPLASTRDAARVFEVSHAYVWRLLNREGLHPYHFTRVQELHPPDYAARLAFCNWITEERRNILWTDESTFTRVGMFNIHNAHYWTEENPRVVRPDHFQTRFSVNVWAGILGNRILGPVFLDRLNGETYLRLLQTRVRRMLERIPLEEIRGLHFQHDGAPPHFAISVREFLNGVWYGGERWIGRGGPVPWPPRSPDLTPLDFFLWGRVKDLFYGQTGHDIRSVGELKRRIKRAFRLVKSETDTLNKVKRHVRTTIVRNYKKTPGTRNYRNYTTEVLEEAIEKITDNEMSISQASQTYNIPFGTLYHPELWLLYLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -