Ppra009332.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621237.1:41213463-41215566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-12 3.7e-10 41.3 0.0 2 43 16 57 15 59 0.92
Sequence Information
- Coding Sequence
- ATGGTTAATAATTATAGAAGAACGTCTAATCGGAATTCATGGAACGAGACTAACATGAAAAAAGCTATTGAGAAAGTCATATCCAAAGAAATGGGGCTTAACAAGGCTTCTACTGAGTTTAATGTgccaaaaacaacattaaaacgTAGGTTGGAGAAATATATGACTACCCAAGATATGGATAGAGCTACAGAGAAGAAGTTGGGCAGGTTTAAACAAGTATTTAGTAAAGAGCAAGAATTTGAATTAGCTTCTTATGCCAAAGATATGGAAAGCAGATTTTTTGGACTAACAACCAAAGAAATGCGGATATTAGCATATGATTTGGCGGAAAAGAATGACATTAGCCATAACTTTGACACAAGCAAGAAAATGGCAGGCAGAATATGGCTTGAAAATTTTCTCAAGCGTAACCCAGATCTCAGCCTTCGTAAGCCCGAAGCAACCTCCGCAGCCCGAGCATCCGGTTTCAACAAAGTTTCTGTAGATAAATTCTTTGATTTGCTGGAACAGGCTATAGAAACACACCAACTGACTCCTGACCGAATTTTCAACGTAGATGAAACAGGCATGACGACCGTTCCGAAGACTATGCCCAAAATAATCGGAGCCAAAGGGAAAAAACAAGTTGGGTTATTAACTTCTGCTGAACGTGGCCAGTTAGTGACCGTCGTGTTTTGTTTAGGGGCAGATGGTTCTTACATGCCCCCGTTATTCATCTTCCCGAGGAAGAGAATGAAGCCCGAATTGATGATTAATGCACCCCGTGGTTCTTGGGCCGAGTGCCATGAATCGGGATGGATTCAGAAAGAAATATTCACCTCTTGGTTCAGAAAATTCATTGTTTTCAGTAGAGCTTCAAAGGAAAAGCCAGTGCTTTTGATTCTAGACGGTCATGCCAGCCATACCAAGAACTTGGATATCATTGATTTGGGGCGAGAACATGGTGTTCACATTTTAGCAACTCCTCCACATTGCACTCACCGACTGCAGCCGTTAGATGTGGGTTTTATGAAACCTTTGTCAACATATTATACAGAAGCGTCACAAAACTGGTTGAAGTCCAACTGTGGTCGGATCATAACACAGTTTCAGATTCCAGAATTGGTTGATAAAGCATTTCAAAAGGCTGCTACGATGTCAACAGCATTTAATGCTTTTCGCGCTACAGGAATTTGGCCTCTGAATCGTGATATTTTCACTGAAGCTGACTTTTTAGCAGCAGCAGCTACCGACATTGCAGTTGCGTGTGATAGTTCAGTAGCGTCTACTTCTGATACCCGCCAAGAAGATAATAATTCAAGTATCCAAAGACCTCAGCCATCAACTTCAAGAGCAGACAATGTATTGGCCACAAACATTAATGAAACCCAACCATTGGAAGATACCAATGCAACAAGACTGACTGCTAAAGACCCTGACATAACAGTATCATCGCCCTCCATGTTGGATGATAGCCATCATGAAAATCTATCTTCTACGTCACTCACGGCAAGTGCAATATTATATGCAGAAGACATTGTAGATGAGCCCCAACCTTCTACATCAATGGCCACAAAaaatgttgttaaaaaaagtgcGTTTCTGGTCGGACCTAAAGATATAACGCCAATTCCAAAAACAACAAAGACTAAAAGGGCCAACATCAGACGTGGTAAAACAGCAATTATCACTTCTTCACCGTACCGTCTAGAATTAGAAACTtctcaaaataaaaaagctGATCAGGTGAAAAAAGGACTATTTAGAGATGACGAAACACCGAAGAAAAGAAAAGCAGCAACCAAAGGAAACAAGTCTTTAGTAAAGGGATCGAAGAAGAAAATGACAAAATATAAGAACGACACCATACAAATATCATCGAAAGATGATGATGCGGAATGCCTTTACTGTGGCCACATGTATTCAGAATCAATAGATGGGTGGGTGCAATGTCAAGATTGCCAATCATGGGCACATTGCGGTTGCGCTGGAGTAGACGACAACGATGATGAAGTTATATTTGTGTGCGAAAGATGCTCTGATTAG
- Protein Sequence
- MVNNYRRTSNRNSWNETNMKKAIEKVISKEMGLNKASTEFNVPKTTLKRRLEKYMTTQDMDRATEKKLGRFKQVFSKEQEFELASYAKDMESRFFGLTTKEMRILAYDLAEKNDISHNFDTSKKMAGRIWLENFLKRNPDLSLRKPEATSAARASGFNKVSVDKFFDLLEQAIETHQLTPDRIFNVDETGMTTVPKTMPKIIGAKGKKQVGLLTSAERGQLVTVVFCLGADGSYMPPLFIFPRKRMKPELMINAPRGSWAECHESGWIQKEIFTSWFRKFIVFSRASKEKPVLLILDGHASHTKNLDIIDLGREHGVHILATPPHCTHRLQPLDVGFMKPLSTYYTEASQNWLKSNCGRIITQFQIPELVDKAFQKAATMSTAFNAFRATGIWPLNRDIFTEADFLAAAATDIAVACDSSVASTSDTRQEDNNSSIQRPQPSTSRADNVLATNINETQPLEDTNATRLTAKDPDITVSSPSMLDDSHHENLSSTSLTASAILYAEDIVDEPQPSTSMATKNVVKKSAFLVGPKDITPIPKTTKTKRANIRRGKTAIITSSPYRLELETSQNKKADQVKKGLFRDDETPKKRKAATKGNKSLVKGSKKKMTKYKNDTIQISSKDDDAECLYCGHMYSESIDGWVQCQDCQSWAHCGCAGVDDNDDEVIFVCERCSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017269;
- 90% Identity
- iTF_01415752;
- 80% Identity
- -