Ppra024845.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621245.1:7689514-7717602[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.2e-05 0.018 16.7 0.1 15 42 7 34 2 37 0.78 2 3 3.9e-10 1e-07 33.5 0.1 1 42 140 181 140 183 0.92 3 3 4.8e-09 1.2e-06 30.1 0.1 1 40 240 279 240 284 0.91
Sequence Information
- Coding Sequence
- ATGAAAGCCATAGAACTAGGGACCATGACACAGCAAGCTGCATCAAGACGTTATAAGATTCCTAGAATGACACTAAGGGATCACTTGAAATCTGGAAGCATGGAGAAACGGACCGGACGCCGTGCATTACTAAGTCAAGAACAGGATCTTATCAGAGTTATCATCAATAGCCATAAAGAGGACACCTTGACACCTAAACTCATTCGTAGAGCAGCATACGTTTACTGCAAAAAACATAATATCAAACACAACTTCAATAGGAATACCGGCCTTGCTGGTGAAGACTGGTTAAAACTATTCTTGAAGCGGAATCCcgaaattttagataaattagcaactactaaaacaaaaaaaaatgataaaaatgggATTTCTGTACACTTATTGCTTGAAGAGTTTTCAAAGAGAGCAATTTGGACTGAAGAGAATCTATGCAGAGCCATGGAAGCCGTTAGATCCGGAGAATTATCAAAACTTGCTGCATCCCGATACTATAGCATTCCACAAACCACTCTCCGGGAGCACTTGAAATCAGGAAGCACTGTGAAATGCTTAGGGCGACGTTCTGTATTAAACAATAATGAGGAAGAGGAACTTGTTGCAAGAATACTGGGCTTCACTAACATTGAAAACCTTGTCACTCGTAAATTCATTCGCAGACAAGCGTTCCACTTTTCTATACTTATTGTCCCATCAAGACGTACTAAGGGAAACTGGTCGGAAGAAACTCTACGCGCAGCTATGGCAGCAGTAAAACGAAAGGAGATGAATATATCTGCTGCTGCAGATCACTATGGCATTCCAAAACAAACTCTATCGGGACACTTGAGAAAGGGGTCCTTTGACAAACGTTTAGGAAGACGTGCAGTTTTAGATAAAGAACAGGAGAAGGAattggttaaaaaaatattgggaTGTGCCAAAAGTGGTGCGATATTTTCAATTTCATCCCGTGGAGCGCCGATTATATCGTTAAATGGTTATAAATTCTATAAACAAAGGACAAATGGCGGGAAAACAAGATGGTGGTGCGGTACTAATGTAATGAAGGGATGTAGTGCAGTCTTGTTCACTATTGGTGAAGAAATAGTTAAGTGTAATAATGAGCATAACCATCCACCGGTCTATgGTGTGTTCAGATTAAACTCTAGCTGCCGAGGCAAGAAGGTGATAAAAGCACGTAAGGCTAGTAATCATCAAATTAAAAAGAAGTTCATGCAAGCACAAGAAGTAACATTGAAGAATTCTACATTTCCTATACAGACCATGGAACAACCAGACCGTACTCCCGAACTTACTCCTGAGTTAGAGAAAAGATTGctgtactatattttatttatggaataTAAATACTATGGCATTTATATGGCATTACACGAATAA
- Protein Sequence
- MKAIELGTMTQQAASRRYKIPRMTLRDHLKSGSMEKRTGRRALLSQEQDLIRVIINSHKEDTLTPKLIRRAAYVYCKKHNIKHNFNRNTGLAGEDWLKLFLKRNPEILDKLATTKTKKNDKNGISVHLLLEEFSKRAIWTEENLCRAMEAVRSGELSKLAASRYYSIPQTTLREHLKSGSTVKCLGRRSVLNNNEEEELVARILGFTNIENLVTRKFIRRQAFHFSILIVPSRRTKGNWSEETLRAAMAAVKRKEMNISAAADHYGIPKQTLSGHLRKGSFDKRLGRRAVLDKEQEKELVKKILGCAKSGAIFSISSRGAPIISLNGYKFYKQRTNGGKTRWWCGTNVMKGCSAVLFTIGEEIVKCNNEHNHPPVYGVFRLNSSCRGKKVIKARKASNHQIKKKFMQAQEVTLKNSTFPIQTMEQPDRTPELTPELEKRLLYYILFMEYKYYGIYMALHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -