Ppra026320.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621246.1:1793555-1803468[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 3.5e-08 35.0 0.0 4 39 115 151 112 155 0.89 2 4 1.1e-11 2.9e-09 38.5 0.2 2 39 167 204 166 207 0.92 3 4 5e-14 1.3e-11 46.0 0.1 2 45 222 266 221 266 0.96 4 4 8.3e-18 2.1e-15 58.1 0.1 1 42 273 315 273 317 0.95
Sequence Information
- Coding Sequence
- ATGGATAGTGGTTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCCGCAGCCACTCCAGTATGTGTGAAACAAGAGAGGGCAGAGACTCCGCCCACTCTGGAGACTTTGGAGTCGGCACCGCAACATGTCAAGAGCACATCGCTTCTGGACAGACACTTAGAGTTAATGACTCCCAGAGACGTGGCAGAAACGACAGACTTTATGCCATTGTTATCAGTCAAGGATGAGCCATCGTCCGAAGGTGAACAGCACCATCTCAGCGAAGACGACACTAGTGACTCCTGCGGGAGACAGACATCGCCAGCACTGCGACAAAGCCCCAAAAGTTGGACCCAGCAGGATATGGACCAAGCCCTTGACGCACTTAGAAGACATCAGATGAGTCTTACCAAGGCATCAGCAACATATGGCATTCCGTCCACAACACTCTGGCAACGAGCCCATCGGCTCGGCATCGACACCCCCAAGAAAGAAGGCGCTGCCAAGTCCTGGAGCGACGCTGACCTGCGGGCTGCACTGCACGCTTTGCGAACTGGTGCTATTTCAGCTAACAAAGCCAGCAAGGCTTATGGTATTCCTAGCAGTACTTTATACAAGATAGCCCGTCGGGAGGGTATTCGCCTCGCAGCACCGTTCAACGCGGCGCCAACGGCGTGGCGGCGCGCGGATTTGGCACGCGCACTCGCGTCTATCCGCGCCGGGGACTCCTCCGTGCAGCGCGCCGCCGCTCTCTATGGAATACCCACTGGAACTCTTTACGGGCGATGTAAACGGGAAGGCATCGAGTTATCGCGGTCTAATCCTACTCCATGGTCGGAAGATGCTATGAGAGAAGCTTTAGAGGCAGTCAGAGTGGGCCAAATGTCAATTAACCAGGCAGCCATACACTATAACTTGCCATACTCGTCCTTGTACGGCAGGTTTAAGAGATGCAAGTACCAGATGCAGGTGCTTCCACAAAATCAGCAACAACCTCAACAAGAACTTGAAAAAGAAGTTCTGGAGCCAAACCCAGAACTTCAATACTACCAGCAATTGCCCCAACACGAACCTCACACATACACGCAAATGTCGGACTACACGCACGACACACACATGCAGGACATTCAGTACGGGTACTTCCAGAACTTTAGTAGTGCTGTCACAAGCTGA
- Protein Sequence
- MDSGLEELAPLAPAGPAATPVCVKQERAETPPTLETLESAPQHVKSTSLLDRHLELMTPRDVAETTDFMPLLSVKDEPSSEGEQHHLSEDDTSDSCGRQTSPALRQSPKSWTQQDMDQALDALRRHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALASIRAGDSSVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMREALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQVLPQNQQQPQQELEKEVLEPNPELQYYQQLPQHEPHTYTQMSDYTHDTHMQDIQYGYFQNFSSAVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -