Basic Information

Insect: Pseudococcus viburni
Gene Symbol: RREB1
Assembly: GCA_033439095.1
Location: JAVBJF010000028.1:1128507-1138931[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3 1.2e+02 3.9 0.1 1 23 80 102 80 102 0.90

2 13 0.0013 0.12 13.3 0.2 2 23 108 129 108 129 0.96

3 13 1.4 1.3e+02 3.8 2.9 1 21 170 189 170 193 0.80

4 13 0.00018 0.017 16.0 0.3 1 23 300 322 300 322 0.98

5 13 0.00066 0.063 14.2 0.4 1 23 332 354 332 354 0.98

6 13 0.02 2 9.5 4.1 1 23 360 383 360 383 0.97

7 13 0.049 4.7 8.3 1.2 1 23 805 828 805 828 0.96

8 13 0.014 1.3 10.1 1.5 3 23 1062 1082 1060 1082 0.96

9 13 0.4 39 5.4 4.8 1 23 1088 1111 1088 1111 0.94

10 13 0.017 1.6 9.8 1.6 1 23 1155 1179 1155 1179 0.94

11 13 0.023 2.2 9.4 0.6 1 22 1251 1272 1251 1274 0.86

12 13 0.003 0.29 12.2 0.3 3 23 1332 1352 1330 1352 0.96

13 13 0.0026 0.25 12.3 4.6 1 23 1358 1380 1358 1380 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3	1.2e+02	3.9	0.1	1	23	80	102	80	102	0.90
2	13	0.0013	0.12	13.3	0.2	2	23	108	129	108	129	0.96
3	13	1.4	1.3e+02	3.8	2.9	1	21	170	189	170	193	0.80
4	13	0.00018	0.017	16.0	0.3	1	23	300	322	300	322	0.98
5	13	0.00066	0.063	14.2	0.4	1	23	332	354	332	354	0.98
6	13	0.02	2	9.5	4.1	1	23	360	383	360	383	0.97
7	13	0.049	4.7	8.3	1.2	1	23	805	828	805	828	0.96
8	13	0.014	1.3	10.1	1.5	3	23	1062	1082	1060	1082	0.96
9	13	0.4	39	5.4	4.8	1	23	1088	1111	1088	1111	0.94
10	13	0.017	1.6	9.8	1.6	1	23	1155	1179	1155	1179	0.94
11	13	0.023	2.2	9.4	0.6	1	22	1251	1272	1251	1274	0.86
12	13	0.003	0.29	12.2	0.3	3	23	1332	1352	1330	1352	0.96
13	13	0.0026	0.25	12.3	4.6	1	23	1358	1380	1358	1380	0.97

Sequence Information

Coding Sequence: ATgattcataaaaatggtaacCTTCTAGAGCCGGCGGTTACGTTACCATTGAAACGTAAATCTCTCCTAATCCTCAACAATAATTCGGTTATCGTCAACAAGAATAAAGTTACCGAAGACGATACGCCCTCCGAAAGCAACGACGACTGCAACAACAACGACTACGTAGATCGCAGCGACGACCACACCGATCACGATCACGAGGACGACGTCGATGCGAAATACTACGATAATGATTTCAAGTGTCCGGTTTGCTCGGAAACCTTGCTAACGGTCGAAGCTCTGGATGACCACTTGAAACAGCATCCGCACTACAAGCCGACTTGTAAGCATTGCGGAGAAGTGTTTGCCGACGCGGATATATTGATCAAACATACCGCCATGCACGTGACGGATAAATGTGCCATACGCAATAATCAAATAGTAAACTTGAAGATATTAAATTATTTAGAGAATAAGAAtacaatttaccaaaaattagccGAAACTATCGACGCTAGTCAATCGTACAGATGTAACTTCTGTAACGAGTCATTTATCGGTAGTAATTTCATGGCGCATTGGAAACAATGCAAACATTTCCATTCGGACGATTCGAATTCCAAACTTACCAATTCCGACGAATCGTACAACGCTGACAAATCACCCAAAGATTCGCTGGGTGACGAGAACGAAGAAGCGGAGGAAATGAAGAACCATTTCTTAGCCGGGCTAAATCTTCAAAGTAAAAGCGATCGATTATCGGACGACGGAAGTTCGCCGGAGAAATCAGACATCGTCTCGAAAATGGCTAAAGATATCCCTTACCCTAAACTCGGCTCCTTTAAAGACGACGAAttaaacgacgacgacgatccGTTCAAATTAGAAGTACGAGATATGAAAAGAAGAGGCGAATTCCCGTGTCGAATTTGcaagaaaattttccgaaatttacgcGCCCTCAAGGGCCACGCTCGAATACATATTTCCGGCAACAGAGGAATCATGCCTTACGAATGTAACATCTGCTCGTTCACCACGTCCGATAAATCGGTAGTCATACGTCATATTCGTAATCACAACGGCGACCATCCGTACAAATGCCAATTGTGTTTTTCCACCTTCACCACCAAAGCCAATTGCGAACGTCATCTTCGCAACGCTCACCGTAAAACGTCTCGAGAAGATATTAAAAAGTTGCTGGTCGATTTGAACCATAAAACTCCCAATAACACCGGCAGCGTCAGCGCAGGCGCCACCAATTTCAACAACAAACTTCAAACGTTGCTGACCAACAATAAAAGGCCGAATATTAACAAACTGCTGGCCAAAAAGATACCGGAGGAATTCCAGCAGAATTTCTGCACCGATGATTTCTACAGAAAAGTCGATCGATCGGAGCACTCCGAGGATGAGAAATCGATTCGAATGTACGACGACGGCATTTCGTTCAACGATCGAAGTGGTCGCAGCGATGCCGACGACAGCAACAATAGTAACGATAGCAATAACAACAATAATGCTGGCATGTTGAACTCGTGcaagaaaatcgaagaattcGCCTCGGTCAATCCCATTTTACTGGCTGGGGCTGATTATAAATACCCCACGTTCCATTTACCTACCGGATTAGACATGCGGCTGTCCAAATCGGAGAAGCAATTCTACGAAGCGAATTATAAAACGTACAACGACGTCATTGTCGGATCCGGATTGATCCCGACCATTATCAAAGACAACGGTCTCATCAAAGTTCCTTCCTTCGAGACTCCCTATCTACCGAACGGCACCTCGAGTCCGGATCTCGACGAACCGTTGGATTTGAGCGTCGACGTGCTAGACCTGAGTAAAAAGAAAGACTCCGACGGAGGTGACGATTCAGCTGCCGAAGACCTTTCGATCAAGACGTCTCGAGAATACAGCAGCGAAAAATCCGAGACAACGTCGCCCATTCGTAAACCACCCGTTAACCCTTTGCTGGTAGGCAACATCAACCAGAGCTTATTTTTCGGCAAAGAAGACCTCAGATACAATTTCCCCAACAACCATCAAATGGTTACCAATTTCTCGTCGTATTTTATGCAAAATCCCAGCGTCAACTTATTCCCTAATAACTTGAAACTCGAACCGGAAGACGACCATTCGAAAATCCGGCCTCTTATATTCAATCAACTCGTAGCCAACGCTGCCGAACGATACGAAGGTATGCGACAATCCATCCCCGCAGCTTTCGTCGATTTCGCCAAAAAATCCGACCCTATTATATCCGAAGACGTGCTCGAAAAACCCGATCCGGCTAAATTCAACCATACCAAAGATCTAGCCCAATCGAAGCCTCGTAACAACAAATCGTCGACCGTGAAAATGGTCATGAAAGACGGCGTACTCGTCGAAAAGCAAAAACAACGTCGTTACCGTACCGAGAAGCCATTCTCTTGCGCATATTGTTCCGGTAGATTTACCCTGCGGTCCAACATGGACCGACATGTCAAACAACAACATCCTGGCTTCTGGAGACAACGCCAACGTGGCGGATCTACCAGAACCCAACGAACAAAACATAATACCAAAGAAGAATCCTGCGAATCGGCCGCCTTCCCGTCGACCCTCACTTCCGATATTGTATCCGAACAAGAAACAATGTCCCATGATATGGATTACCCCTCGAATACCTCCGGTAAAAGATCTCCAACCAGTTATATCAGTGATCACGAGGCAGATACCGAAGATAACGTTGAGAAATGCAAAAAGAAGAAATCCGACGATATGGATAATTCCATCGCCGACGAAGACGATGACGACGATGAAGAACTCGTGATCGATGAAGAAATGGAGGAGCACGAGAGTGAAGAAAAATCCAGCGAGACTTCCACCGCTAATACTTCCCTCGAGAAGGATACCAATGCCAAAGAGGAGAATCCGGATTTGGCCAGTGTGAGGAGTCTTCTCGATAATGTATCTACGCAAACGTTTAGTCAGTTTTTTCGACCCGAGGATGATCCGAATAATAAGAACGGAGATGGTAGCGACGACGATGAAGAAGGATTGGTTGCAGGCAGCAGTAGTGAAGGAAATGGATCCGGAGGCGAAGAGAATAGAGTTTCGAACGAGTCAAACTCGAAAAACCCCAACAAATCGAGCTCCGGAGACGGtgcgaaaaagaagaaaagcgCCTACTCCTCAGCCCCTAACCGAGTCCACTGCGATTTCTGCTACAGATCGTTTCCGTGGGCATCATCGTTACGACGTCATACTCTAACCCATACCGGCCAAAAACCGTACAAATGTTCCAACTGTCCGCTTCTCTTCACGACGAAATCGAACTGCGACAGGCACTTCCTTCGTAAACACCGTTCGCAAATGACCGACTCTACCCAGCCCAGCACGGTGACGGTGATCAGCAATCCAACGGAACCCGATGCTGCCTCCAGTACCAGATTGATACCGAACTTTTCCACCCGAAATGTGCCCGAGCGACCGTTCAAATGCAGCAATTGCCCTAGTTCCACTTTCTCGACTTATAACAATCTTAAAAAACATATTATCGAGAAACACAACCAAACCGACGAGAAATTCGTCGATAATCCAAAATCGCCTTCGTATTCGAACGAATCGCAAATCAAATGTAAAAAAGACGAATTCAATTTATCCGATCCCAGCGACGTAAGCACCGTCGAAAAACCAACCATCCCAGATGAACCTGTCAAAGAGAAAACGCCAATATATGATCAAGCGGGCTTCTTCAACCACGTATCTTCCGATTTACCATTCAAGTGTCATCTGTGCGATCGCAGCTTCGGCGAAAGACAAGAAGCATTGGATCACATGGGTGAAAGCCATTCGGTCGAGTTTCAGCATCTCATTTGTAAAGGAGCGCTCGACATGAATGTCAAAATGGAGGATTCCATTAATCACGAAGATGGCATGTTCATGAGCTCAGCCAATAGCGACGAAAACAATGCCGAGCAATGTCGAGGGCGTTTTCCCGATTACTCCAGTCGAAAAGTAATTTGCGCCTTCTGCCTGCGACGGTTCTGGTCAGCCGAAGATTTACGTCGTCATATGCGTACTCACACCGGAGAACGACCATTCGCGTGCGACATTTGTCAACGTAGATTTACCTTGAAGCATAGCATGCTTCGACATCGTAAAAAACACTCCAATAAATCGTCCAGCTTCGTTTCAACATCCGGCGAGAATTCTCCCATCTCCGACGACGAAGAGCCACCTTCTCCCGGATCATTTACCCAGCCCATAAGTCGATCCAGCGACAAAAAACCCACCGATTTGATTTCCATTTCGCACaagctgttgaaaaatttcgaagagaacgagaattcgaatttttctcccGAAAAGGAGCCCAAAGCTACCGAAATTAAATTACCCAACGTTAAAGGAAGTCTATCCAAAGAAGATGGCGTTGATCTCATAGCTAAATTGTTAGACATAGACGATAAATCATTGGTAGATGAAATGTTAACGAGTAAATCGGCCGATGATGTGGCCAAATTATTAGGAGTTAAGAAGTAA
Protein Sequence: MIHKNGNLLEPAVTLPLKRKSLLILNNNSVIVNKNKVTEDDTPSESNDDCNNNDYVDRSDDHTDHDHEDDVDAKYYDNDFKCPVCSETLLTVEALDDHLKQHPHYKPTCKHCGEVFADADILIKHTAMHVTDKCAIRNNQIVNLKILNYLENKNTIYQKLAETIDASQSYRCNFCNESFIGSNFMAHWKQCKHFHSDDSNSKLTNSDESYNADKSPKDSLGDENEEAEEMKNHFLAGLNLQSKSDRLSDDGSSPEKSDIVSKMAKDIPYPKLGSFKDDELNDDDDPFKLEVRDMKRRGEFPCRICKKIFRNLRALKGHARIHISGNRGIMPYECNICSFTTSDKSVVIRHIRNHNGDHPYKCQLCFSTFTTKANCERHLRNAHRKTSREDIKKLLVDLNHKTPNNTGSVSAGATNFNNKLQTLLTNNKRPNINKLLAKKIPEEFQQNFCTDDFYRKVDRSEHSEDEKSIRMYDDGISFNDRSGRSDADDSNNSNDSNNNNNAGMLNSCKKIEEFASVNPILLAGADYKYPTFHLPTGLDMRLSKSEKQFYEANYKTYNDVIVGSGLIPTIIKDNGLIKVPSFETPYLPNGTSSPDLDEPLDLSVDVLDLSKKKDSDGGDDSAAEDLSIKTSREYSSEKSETTSPIRKPPVNPLLVGNINQSLFFGKEDLRYNFPNNHQMVTNFSSYFMQNPSVNLFPNNLKLEPEDDHSKIRPLIFNQLVANAAERYEGMRQSIPAAFVDFAKKSDPIISEDVLEKPDPAKFNHTKDLAQSKPRNNKSSTVKMVMKDGVLVEKQKQRRYRTEKPFSCAYCSGRFTLRSNMDRHVKQQHPGFWRQRQRGGSTRTQRTKHNTKEESCESAAFPSTLTSDIVSEQETMSHDMDYPSNTSGKRSPTSYISDHEADTEDNVEKCKKKKSDDMDNSIADEDDDDDEELVIDEEMEEHESEEKSSETSTANTSLEKDTNAKEENPDLASVRSLLDNVSTQTFSQFFRPEDDPNNKNGDGSDDDEEGLVAGSSSEGNGSGGEENRVSNESNSKNPNKSSSGDGAKKKKSAYSSAPNRVHCDFCYRSFPWASSLRRHTLTHTGQKPYKCSNCPLLFTTKSNCDRHFLRKHRSQMTDSTQPSTVTVISNPTEPDAASSTRLIPNFSTRNVPERPFKCSNCPSSTFSTYNNLKKHIIEKHNQTDEKFVDNPKSPSYSNESQIKCKKDEFNLSDPSDVSTVEKPTIPDEPVKEKTPIYDQAGFFNHVSSDLPFKCHLCDRSFGERQEALDHMGESHSVEFQHLICKGALDMNVKMEDSINHEDGMFMSSANSDENNAEQCRGRFPDYSSRKVICAFCLRRFWSAEDLRRHMRTHTGERPFACDICQRRFTLKHSMLRHRKKHSNKSSSFVSTSGENSPISDDEEPPSPGSFTQPISRSSDKKPTDLISISHKLLKNFEENENSNFSPEKEPKATEIKLPNVKGSLSKEDGVDLIAKLLDIDDKSLVDEMLTSKSADDVAKLLGVKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01491408;
90% Identity: iTF_01262888;
80% Identity: -