Pvib004265.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- Nnp-1
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000036.1:561950-569361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.033 3.2 8.9 0.8 2 23 883 904 882 904 0.96 2 9 0.0032 0.31 12.0 3.1 1 22 939 960 939 962 0.90 3 9 0.01 1 10.4 1.7 3 23 973 994 971 994 0.95 4 9 1.3e-05 0.0012 19.6 4.3 1 23 1039 1061 1039 1061 0.98 5 9 0.00025 0.024 15.5 2.7 1 23 1067 1091 1067 1091 0.91 6 9 9.1e-06 0.00087 20.1 1.6 1 23 1103 1126 1103 1126 0.97 7 9 0.013 1.3 10.1 0.2 2 23 1134 1155 1133 1155 0.96 8 9 0.014 1.4 10.0 2.4 1 23 1161 1184 1161 1184 0.90 9 9 5.8e-06 0.00055 20.7 1.7 1 23 1190 1212 1190 1212 0.98
Sequence Information
- Coding Sequence
- ATGGCCCCTATGGCTGAATATAATGATAAACTAGATATAGTCACTAAAGAAGTAGTGATTTGCAAACTTCTTACATCTAATGACACCAAAGTCAGAAAACGCGGCTTGAAATCGTTGAAGAAATGGTTCAGTGAAATCGGCTTAGCAGAAGGCGTACAAGAAGATGACTTTAATCGTATTTGGAACGGACTTTTTTACTACGTTTGGATGTCTGATAAACCTTTAGTACAGgaaGAAGCCGTCGAATATATTAGCAGCTTGATgcacatcttgaaaaattaccaagcaTCGATGTACTACATCAGAGGGTTTTTCAGTTCATTAGTCAAACAATGGGATCGCATCAGCCATCAtcgaattgataaatttttaatgtttataCGTCGCTTCTTGAGACAAATTCTTATGCTGCTGAAGAAACACGAATGGGATATTGAAAAACTCGAGTTATTTAGCAAAGAATTGTATAACGCTGTTCAAATTTTACCGTATAGCTTGGCGTTacatttaaatgaaatttttaacgaaGAAGTTGCCAAAatttctaaagGAGAAATACCAACTAATAGTTTGGTAGTGTTGTATAAAGGATACATCGAATGTATCGTAAATCTTCGACCTTCAATGCAAATAGTCAATAGTATACAATCGAGTATTTTTTGTGGTTTGGTTCGCCAACTTAAATTATACATCAAACAAAAAGTTCTAACCGAAAGCTGTGATAATGAGgATAACGATGAACTCGGCTCTAAGGAGAAAGCGAACACAATCAATTCGGATTCGAGACATGAAGATGTAGAAAAACTTCAGACTGAAACCTGTGAGAATGAAGATTCTGATAGTGAAGAAATAGCCTTGGATCCGAGACCTGGCGGTGTAGATGTCTTCCTTCCGTACATCGATTTTGACGAGAAAATGTTCGTGAAATTCCTTGAACAGTATACTTCGAAAACAGGAATCCATATTAaagctaaaaatattttgaatcaaattAGTACCATGTTTGCCAGTATTTCgaaattaagaATATCTAAACCCGACGATTTTATTCACGAAATGAAAGAACATCCTAAGAAGAGGAAACGACAGAAAACCATGtctaagttgatgaaaaaagctTGTAACAGATTGGAAGAAGACGATGAATTGGAAGCAGAACGTGATGAAAGAGTGCTGAAAAAATTGGCCGGCTTGACCGATTTAATTCAGATATCAGCCGGTAAATCGACCTTCACGATTGCGCAGGCAAAACCGAAGAATACAGCGACGAAAAGATCTTCGATTTCAAATGATTGGGTCGTAACTGAAACCAACGAGAAACCCAGCCCtgctaaaaaagtcaaaatcagcGGAAGTAAAAGTGATTGGGtcgttgaaccggtttcaaaagaTAAGGAAAAAACTGTCCCTGCTATCGAGCAGTCTGAGTTGATAAATAAGGacgatgaaaacgaaaacgCATCTGATATTTGTCTCGAAATATTGgaagaaagtgaaaaatcgattgaTAAATCCAGtggtgaaaaatcaaagaataaatCTCCGAAGGGAAAATCAATCCCTGTTATCGAGCAGTCCGAGTTAATAAATAAAGACGATGAAACCGAAAATCCATCCGATATTTGTCTTGAAATActggaagaaaatgaaaaatcgaagaataaaTCTCCTAAGGCAAAAACTATCCCTGTTATCGAGCAGTCTGAGTTAATAAATAAGGACAATGAAACCGAAAAGCCATCCGATATTTGTCTTGAAATACtgaaagaaagtgaaaaatcgaagaataaaTCTCCGAAAGTTTCATTTTCAGAACAACCTACGGTAACGATTTACGAAAACGATAAGGGTAAAGAAACTGGAGCTAGTGATACTGAAAGTGAAATCATAGTACCATCATCGGTTGTAAAAGGAcatccaaaattaatgaaaaaagatAGAGATTACGTCGTTGTAGATTTTAAACCTGAAACTGTCGTCGATGAAGAAAATGAACCTGATActaaaaaaatatcacccaaaGTTACAAGAACACTTCGTAGTAGAAAAGTTGAATCTACACCAGCTCCCGTATCGACTCCGGATTCAAAAAGAACGAGGAAACCGcgtgaaaaaaaagtggaaccAGCGAGTCAACGAAAGAGCTCCAGAATCGCAgagaaacagaaaaaagttcTGTTTAAATTGGAAGATAATACCTATCAAGATATTCGGACGTATGAAAAAGTTCTTAAATCGAAGCCAGCATCTCCTTTCGATGTCTCGAAAATACCTAATTGTGGTATTCTCAAACCATTCGCCGTTACCACTCCGATCAATCCTTTCTATTTTGCAAATGATCTGGACACTGATGCGAACCTAATTCCGTTCGAATCGGCACTCGTCCTAGAAACAATGGATCAAATCAAATCTCAAATCATAACCGTTGTCAACACGGTGGATAAATTAAACATCCAAGAACGACTCGAAGCAGTTAGCTACTTACAGAAGATAACCGAAGCGTACAAAAGCAAATCGTTATGTCCAGatatcGATTTAGATTCATCGATAAACGCCGAATCTAGTAAAAATCTCAATAAGAACTATAAACACAAATGTCGTAATCATTTGTGCTTAACCAATAACgtgaaacatttgaaaaaagtagtcTGCTTCAAATGCGACAAACGTCTGGAAAACGAGTTTCAACTGTTTGATCATTCTCAAACGCACTTGGATTATCCATTATCTTGTTTATTATGTCGCTGTATATTTCGCAACGTGGAAGACTACAACGGTCACAAATCGACGGATTGTAACCAGAACAAAGATCGTTACGTGTGCAGGGTTTGTCATCGTTCGTTTCCTACGAAGAAGACGTTCCAGTCGCATTCTTTGGATAATCATGGAACAAAGTTGTACGATAATTGGTACGGGTGTAAATTATGTCAAGAGATGTTCGAACAGAAGAAATTATTGTATCATCATTATAAAGAAGCTCATTCCCAGATGAAATGCCAATTTGAAAAGAACAGCGTTAAGATTGCTAATTCTAAAACTACTGCTCAAaATAAAGAAAAACCACTTAATGGCAGCGAAACATCAAACGACGAAGAACCTGAagacgttgaaaaattccaatgtgTTCATTGCGATAAAACTTTTAAGAAGAAATCCATGCTGAGCGTTCACGTCAAACGTCATTTACGAGACTCGGAATTCGTTTGTAAAATTTGCAAGAAAACGTTCACCGTGTATCGTTACTACAAACGTCACTTGCAAAGCGTCTCGCACCAGAACAGAGATGGCCAAGACAACTATCCCATCTTCAAATGTGATATTTGCAAGAAATTGTTTTCGAGTCGCGATTCGTTATCGCGACACCAACTCAGGATACATTTTACCGCTGATAAAAGACTGAAATGCCCGTTATGTGATTTTAAGACAGCTTTAGCCACTAGTCTAAGCAGACATATTAATTTACACACAGATAATAGGAAATTCATTTGTGATCAGTGCGGTTCATGTTTCCATACGTTGTCTGCGCTGAAAGATCATACGGTTTATGTGCATTCGAACGAACGTAACTACAGTTGCGAGATTTGTGGCCAACGGTTCAAGCTGAAGAGTGGATTGAATAGACATTTCAAGACACATTCCAATGAGAAAGAATTCAAGTGCTTTTGCGGACAGaCTGGCAAAAAGAACAACGTAACTCGAGTAACAACCGAAGAAGAGGGTTACGCTCTAAACTCTCCAAAAGTAGTAAAACaacaaaaaagcaaacaaaCAAAAGACATCGTTGACGCTACGAACCAGCTAGACGAATTCGACATCTCATCGCTGAGCGGTCTAACCGACGTCGACTTATTATGCGCCGAAGAAGTCCTCTGCGACACGTACAACTTCTCTAAATCGTCCACCGGTAGCACCGAATCGCAGGAAAGTCTGAATTCCATCCTAGCTCCGGCTCAAGTCGTAGACCACGTCCTACAACAAGCCACCGAACCGGCACCTATGCAGAAAACATCTCTCATGGATGCGAAACACTTCGACATGATGGCCCAATCAGCAGCTGCGAATTACGTCGATAATAATTTACCACCTTTGAATTTCCGGCCATTTTCCTGTCGCCAATACTTGCCACAGAATTTCACAGATGTCCTTGGCCCCGAGTACGGTTCGCAGGTGGCTTCTACGAGTGGTAAATTCGATAATCAGTACCTGAGTGCTTCGTTCGAAGACGCTAATGGAATTATGGAAAACGCCTGTAATCGTCAATACGCTACGAATTATTTACCGGTACCTGAAATACCAGTCGAAGATGAGAATCCGTTCCCGTATAGTAAATGGTTGCATGAAATGTGA
- Protein Sequence
- MAPMAEYNDKLDIVTKEVVICKLLTSNDTKVRKRGLKSLKKWFSEIGLAEGVQEDDFNRIWNGLFYYVWMSDKPLVQEEAVEYISSLMHILKNYQASMYYIRGFFSSLVKQWDRISHHRIDKFLMFIRRFLRQILMLLKKHEWDIEKLELFSKELYNAVQILPYSLALHLNEIFNEEVAKISKGEIPTNSLVVLYKGYIECIVNLRPSMQIVNSIQSSIFCGLVRQLKLYIKQKVLTESCDNEDNDELGSKEKANTINSDSRHEDVEKLQTETCENEDSDSEEIALDPRPGGVDVFLPYIDFDEKMFVKFLEQYTSKTGIHIKAKNILNQISTMFASISKLRISKPDDFIHEMKEHPKKRKRQKTMSKLMKKACNRLEEDDELEAERDERVLKKLAGLTDLIQISAGKSTFTIAQAKPKNTATKRSSISNDWVVTETNEKPSPAKKVKISGSKSDWVVEPVSKDKEKTVPAIEQSELINKDDENENASDICLEILEESEKSIDKSSGEKSKNKSPKGKSIPVIEQSELINKDDETENPSDICLEILEENEKSKNKSPKAKTIPVIEQSELINKDNETEKPSDICLEILKESEKSKNKSPKVSFSEQPTVTIYENDKGKETGASDTESEIIVPSSVVKGHPKLMKKDRDYVVVDFKPETVVDEENEPDTKKISPKVTRTLRSRKVESTPAPVSTPDSKRTRKPREKKVEPASQRKSSRIAEKQKKVLFKLEDNTYQDIRTYEKVLKSKPASPFDVSKIPNCGILKPFAVTTPINPFYFANDLDTDANLIPFESALVLETMDQIKSQIITVVNTVDKLNIQERLEAVSYLQKITEAYKSKSLCPDIDLDSSINAESSKNLNKNYKHKCRNHLCLTNNVKHLKKVVCFKCDKRLENEFQLFDHSQTHLDYPLSCLLCRCIFRNVEDYNGHKSTDCNQNKDRYVCRVCHRSFPTKKTFQSHSLDNHGTKLYDNWYGCKLCQEMFEQKKLLYHHYKEAHSQMKCQFEKNSVKIANSKTTAQNKEKPLNGSETSNDEEPEDVEKFQCVHCDKTFKKKSMLSVHVKRHLRDSEFVCKICKKTFTVYRYYKRHLQSVSHQNRDGQDNYPIFKCDICKKLFSSRDSLSRHQLRIHFTADKRLKCPLCDFKTALATSLSRHINLHTDNRKFICDQCGSCFHTLSALKDHTVYVHSNERNYSCEICGQRFKLKSGLNRHFKTHSNEKEFKCFCGQTGKKNNVTRVTTEEEGYALNSPKVVKQQKSKQTKDIVDATNQLDEFDISSLSGLTDVDLLCAEEVLCDTYNFSKSSTGSTESQESLNSILAPAQVVDHVLQQATEPAPMQKTSLMDAKHFDMMAQSAAANYVDNNLPPLNFRPFSCRQYLPQNFTDVLGPEYGSQVASTSGKFDNQYLSASFEDANGIMENACNRQYATNYLPVPEIPVEDENPFPYSKWLHEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -