Pvib008823.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000100.1:150232-152124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.6 6.4e+02 1.6 0.4 2 10 88 96 87 99 0.89 2 13 0.051 4.9 8.3 3.5 1 23 191 213 191 213 0.97 3 13 5.3e-05 0.0051 17.7 1.7 1 23 233 256 233 256 0.97 4 13 0.33 32 5.7 0.5 1 23 261 283 261 283 0.93 5 13 6.4e-07 6.2e-05 23.7 2.0 2 23 290 311 289 311 0.96 6 13 0.018 1.7 9.7 0.2 1 19 316 334 316 336 0.95 7 13 0.00057 0.055 14.4 0.3 1 20 412 431 412 432 0.97 8 13 2.5e-05 0.0024 18.7 0.6 1 22 440 461 440 461 0.96 9 13 0.12 12 7.1 2.6 3 23 487 507 485 507 0.98 10 13 6.8e-05 0.0066 17.3 0.4 1 22 513 534 513 534 0.96 11 13 3.7e-07 3.6e-05 24.4 4.0 1 23 541 563 541 564 0.96 12 13 1.2e-05 0.0012 19.6 1.3 1 23 569 591 569 591 0.99 13 13 0.0079 0.76 10.8 1.1 1 20 597 616 597 618 0.93
Sequence Information
- Coding Sequence
- ATGTCGATGTTGCCTCATCACAAACAAAATAGACATCTCAAAGTCTCAGTGACCGTAATCTCCTTTTACGTTATTTCCTTCATTACAACAGGCGTTGTTTTTTTTAGGTGTGTTACCGGACGTTACGTATTCGTTGATACGAATGCGACTGTGATCGAAAAAGACGACGATATGGTTCCGGCTACTAAACCAAAGAAATCTTCGTCGCCACCGGTACCTCCATCAATCGATAAAGAATTAGGTGGTGCCCCCGGCACCACAAAGTGCAAAGGATGTGGCTCGGTATTTCTAAAAAGTAAAATACGAAGTGCCCAGAATCGCGGCATGTGTTACTCGTGCTATTCGAAATCAACAACGGTATCGCAAGCATTCAAAAACTACCTGGTCACCGACGAGAATAAACAAAGTTACTTTGTATGCGATTTGTGTGACTTTTCTTGCGACGCTTGCCCCGATGTGTTCTCTCATCATTACAAATCCAAACACCCGGGAGCTGATTTATACCAGTTTGGTAAAAGGTCGAAGGATccattgaagaaatttagtCGCGTGGTAAAGGGCGTCCGGGCGTATCGGTGCGATCATTGTCCTATGTCTTGCATTTCACGTAACGTTTTCGTCAAGCATTACCTCGAACACAGTGTTAAAATCGACAAAACCGATACATCTATGAAAATCGAGGCCAAAGATGGTAAATTCTGCTGCCCGGTGTGTCAAAAACCGTACGTCAAGAAGTCAGCAGCCAGGCGTCACATGAAACGTATCCATGGCCCGAAACTGTTCCACTGCGGAATTTGCTTGAAGGGGTTCCCATACGAGTATCAAGCAAGCGAACACGAAAACCTGCATAAAAAAGGTAAATCATTGATGTGCGATCTGTGCGGAAAAAGGTTTGTCCACAAAGGCAACTTGAAGACTCATATGAATAACCATTCCCGTTCGAATTACTCGTGTGCCTGGTGTAATCAACGTTTCAATGATGAAACTGCGTTAAATTATCATTTCATCGAATGTGCTAAGAAGGAAATCAACGCCGCCACGAACAAGGTGAAAATCCAGCCTGAATCGAGCCAGCAATGCGAACAGAAGATAAACGTTGTCAAAGTTGAGACGACAATCCAGCCAGGACAAAGTGTGAAATTCGATCAGCAGAATAGCAATATCGATGTGCCCAAAATCCAGATCAAATTTGTTCCACAAATCGACGATTCCGTCCAAGAATCTGTAACGAATTACGAATGTGccaaatgtaataaaaaattcgattcgaaattATCCCTTCGATTGCATATCGTCGAAGAATTCAACCTAACGCCCTACGAATGTTACATTTGCGATCGTCAATTCTCAACCACGGTGTTGCTCAAGAAACACTTACGCTCGTGCAATAAAACGATTCTAAAGAATTGTCGCGGTGATGACTTATCTTTGATTATAAACAACGGTGATTCGTTCGGTTGTAAGTTATGTGgtagaaaatgtcaaaaaatgggcTACATGAGGCTACATTTGAGGATCCATTCGAACCTTAAACCGTTCGTGTGTCAGTTTTGTGGCAAATCTTACGTTTTCAGGGCGTCGTTCAGGGCTCATATGTTGACCGAGATTAATCAACGTACGTATATTTGTTCGGTTTGTGGTAAAAGGTATAATACTAGTTCTCATTTGACGGCTCATATTAAAAAGCATCATCGTTTGAGGGAGTTCAAATGTAATACGTGTGATAAAGAGTTTGCATATGAGAGAGATCTCAAGGAGCATGAGAAAACTCACGACGAAGTTAAGATGTTCTGTTGCGAGAAATGTGGAGGTTTGTTCAAAACCGCGAAATATTTGAAGGTGCACTTAGCTAAATGTACTGGTATGAAGAAACCTATCACGTTTATAATTTGA
- Protein Sequence
- MSMLPHHKQNRHLKVSVTVISFYVISFITTGVVFFRCVTGRYVFVDTNATVIEKDDDMVPATKPKKSSSPPVPPSIDKELGGAPGTTKCKGCGSVFLKSKIRSAQNRGMCYSCYSKSTTVSQAFKNYLVTDENKQSYFVCDLCDFSCDACPDVFSHHYKSKHPGADLYQFGKRSKDPLKKFSRVVKGVRAYRCDHCPMSCISRNVFVKHYLEHSVKIDKTDTSMKIEAKDGKFCCPVCQKPYVKKSAARRHMKRIHGPKLFHCGICLKGFPYEYQASEHENLHKKGKSLMCDLCGKRFVHKGNLKTHMNNHSRSNYSCAWCNQRFNDETALNYHFIECAKKEINAATNKVKIQPESSQQCEQKINVVKVETTIQPGQSVKFDQQNSNIDVPKIQIKFVPQIDDSVQESVTNYECAKCNKKFDSKLSLRLHIVEEFNLTPYECYICDRQFSTTVLLKKHLRSCNKTILKNCRGDDLSLIINNGDSFGCKLCGRKCQKMGYMRLHLRIHSNLKPFVCQFCGKSYVFRASFRAHMLTEINQRTYICSVCGKRYNTSSHLTAHIKKHHRLREFKCNTCDKEFAYERDLKEHEKTHDEVKMFCCEKCGGLFKTAKYLKVHLAKCTGMKKPITFII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -