Basic Information

Insect: Pseudococcus viburni
Gene Symbol: -
Assembly: GCA_033439095.1
Location: JAVBJF010000186.1:437467-441199[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.028 15.3 4.2 1 23 233 255 233 255 0.97

2 11 1.1e-05 0.001 19.9 1.3 1 23 261 283 261 283 0.98

3 11 0.0039 0.38 11.8 6.1 1 23 289 312 289 312 0.95

4 11 0.061 5.9 8.0 3.3 1 21 318 338 318 340 0.95

5 11 0.00018 0.017 16.0 2.8 1 23 346 368 346 368 0.99

6 11 1.5e-05 0.0015 19.3 1.2 1 23 374 396 374 396 0.98

7 11 0.00011 0.011 16.6 1.9 1 23 405 428 405 428 0.97

8 11 0.0011 0.11 13.5 3.3 1 23 434 456 434 456 0.97

9 11 0.0015 0.14 13.1 1.0 2 23 463 484 462 484 0.97

10 11 2.5e-05 0.0024 18.7 5.4 1 23 490 513 490 513 0.96

11 11 9.8e-07 9.4e-05 23.1 5.4 1 23 527 549 527 549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.028	15.3	4.2	1	23	233	255	233	255	0.97
2	11	1.1e-05	0.001	19.9	1.3	1	23	261	283	261	283	0.98
3	11	0.0039	0.38	11.8	6.1	1	23	289	312	289	312	0.95
4	11	0.061	5.9	8.0	3.3	1	21	318	338	318	340	0.95
5	11	0.00018	0.017	16.0	2.8	1	23	346	368	346	368	0.99
6	11	1.5e-05	0.0015	19.3	1.2	1	23	374	396	374	396	0.98
7	11	0.00011	0.011	16.6	1.9	1	23	405	428	405	428	0.97
8	11	0.0011	0.11	13.5	3.3	1	23	434	456	434	456	0.97
9	11	0.0015	0.14	13.1	1.0	2	23	463	484	462	484	0.97
10	11	2.5e-05	0.0024	18.7	5.4	1	23	490	513	490	513	0.96
11	11	9.8e-07	9.4e-05	23.1	5.4	1	23	527	549	527	549	0.98

Sequence Information

Coding Sequence: ATGAACGCTGAAAGTGGAGATGAAGctataaaaattgagattataGATCAACCATCGTCTAGCAACGGTGCCCAGGAAAACATCACCGATTTACAAAACTATCTGCAAACTTTCAATAAAGAAATTCTCACAGTTCAAGGAGAATCTGatggCGAGTCTCAAGCAAACACCAACGAGGACGGTAGTACCACGTACTATGTCACCGAAACTGGAGAATATTTCTACCAAACTGATGCAGTTGATGGACAGATGGTGACTGTAATAAGTGGAGACAAAAATTCCGAAGTTCAGACTGCACAAGCAATCTCAATCGAGAGTGAGAAAAAATCTAGTCAAAAACAAAACATAGAGGGTAACGAAAACGAAGGATCCGCTGATGGTCAAtccaaaactgTTGGTGACCTATCCCAAACCAGTCATATACTTTTGGGAGAAGATTCCTATCAAACCGTTACCATCGTTCCAACGGAAACAAATCCAGGTGAAGTAAGCTATGTACTGATTGTTCAACAGCCTGATGAAggtgaaaaagaaaaaggagaCGGAGAAGAAGGCGATGATCAAGATCTTACCATTTATgatttcgaagacgctgatgaTCCGTCAGCTAATGGAACGGCGGACTCGTCTGAGGAAGatgataaatcaaaaataatgaaaattgtggCCAGAAAGTCACAAAGTGTGTCTCAAGCTCATATGTGTAACTACTGTAATTACACAAGTCCTAAAAAGTACTTATTATCGAGACATATGAAATCACATTCCGAAGAACGACCGCATAAATGTAGTGTTTGTGATCGAGGATTTAAAACTATAGCTTCGCTGCAAAATCATGTAAATACCCACACCGGTACCAAACCTCATCACTGCAAACATTGTTCCAGTGCCTTTACTACATCCGGTGAACTTGTACGTCACGTTCGCTACAAACATACCCATGAAAAACCGCATAAGTGTTCTATATGTGATTATGCCAGTGTTGAATTGAGTAAAATGCGAAATCACATGAGATGTCACACAGGAGAACGCCCTTACCAATGCCAACATTGTACTTACGCCAGTCCAGATTCATTTAAATTGAAACGCCATCTACGTATCCACACCGGAGAAAGGCCATATGAATGTGATATATGCCATGCAAGATTTACCCAGTCGAATAGTCTTAAAGCTCATAAACTGATCCATAGTGatGAAAGTGATAAACCCGTATTCAAATGTGACCAGTGTCCGGCAACCTGTAGTCGTAAAACTGATCTACGTATTCATGTTCAGAAATTGCATACGTCCGATCGATTATTCAATTGTCGtagatgtggtaaaaatttcccaGATAGATATACCTATAAAATGCACAATAAAACTCACGACGGTGAGAAATGTTGGAAATGCGACCTGTGCCCGTATGCATCGGTATCCCATCGTCACCTAGAATCGCATATGTTAATTCATACAGATCAGAAACCGTTTCGTTGCTCTTTATGTGACCAATGTTTCAGACAAAAACAACTCTTGAAACGCCACCAAAATCTGTACCACGATCCCACCTACGTTCCTCCGGCACCTAAAGAAAAAACCCACGAATGCCCCGAATGCAAACGCGCTTTCCGTCACAAAGGTAATCTAATTCGCCACATGTGTATGCACGATCCAGACTCCGAAGCCGTTCAAACTGCCAACGCTTTGAAAGTCGGACGCCAGAAGAAAATACAGGTCGTGAATGGCGAAGAATTAAAAGTCGTATCGAGCGAAGAAGACATCGTCATGAAAGATGAAATCATCGAAGGTGAAACTAAGCTGCTGAAAAGTGAACTGGGAAGTCAGCTGATCGAAGGAGCTGATGGACAGCATTATGTAGTCTTAGAAGTCATCCAGTTACAAGGAGGTGATGGTGAGCAAGCCGTCGCTGTCGTATCTGAGGGAGATTTCCAAGGTGGAACCATAAACTTGGACGGTTCCGATGCCAGTCAATTTATTACTCCGGATTATATAGAGAAAAGTGACAATAAAAATGAACCAAAGATAACAAAGAATTCTCTCGATTCGGCTAGTGATGTACAGAACTGTTTCGGTTTCGACGACGAAGATGAAGAAATGGAAACataa
Protein Sequence: MNAESGDEAIKIEIIDQPSSSNGAQENITDLQNYLQTFNKEILTVQGESDGESQANTNEDGSTTYYVTETGEYFYQTDAVDGQMVTVISGDKNSEVQTAQAISIESEKKSSQKQNIEGNENEGSADGQSKTVGDLSQTSHILLGEDSYQTVTIVPTETNPGEVSYVLIVQQPDEGEKEKGDGEEGDDQDLTIYDFEDADDPSANGTADSSEEDDKSKIMKIVARKSQSVSQAHMCNYCNYTSPKKYLLSRHMKSHSEERPHKCSVCDRGFKTIASLQNHVNTHTGTKPHHCKHCSSAFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRCHTGERPYQCQHCTYASPDSFKLKRHLRIHTGERPYECDICHARFTQSNSLKAHKLIHSDESDKPVFKCDQCPATCSRKTDLRIHVQKLHTSDRLFNCRRCGKNFPDRYTYKMHNKTHDGEKCWKCDLCPYASVSHRHLESHMLIHTDQKPFRCSLCDQCFRQKQLLKRHQNLYHDPTYVPPAPKEKTHECPECKRAFRHKGNLIRHMCMHDPDSEAVQTANALKVGRQKKIQVVNGEELKVVSSEEDIVMKDEIIEGETKLLKSELGSQLIEGADGQHYVVLEVIQLQGGDGEQAVAVVSEGDFQGGTINLDGSDASQFITPDYIEKSDNKNEPKITKNSLDSASDVQNCFGFDDEDEEMET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262814;
90% Identity: iTF_01262820;
80% Identity: -