Pvib008815.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000100.1:106888-109890[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00086 0.083 13.8 0.4 2 23 207 229 206 229 0.96 2 13 2.9e-06 0.00028 21.6 4.7 3 23 282 303 280 303 0.95 3 13 3.2 3e+02 2.6 3.4 3 23 320 339 319 339 0.93 4 13 1.9e-06 0.00018 22.2 2.8 1 23 345 368 345 368 0.97 5 13 0.00016 0.016 16.1 1.3 1 23 374 397 374 397 0.96 6 13 0.0011 0.11 13.5 1.8 1 23 406 428 406 428 0.98 7 13 0.00059 0.057 14.4 3.3 1 23 452 475 452 475 0.92 8 13 0.13 12 7.0 4.1 1 23 491 514 491 514 0.82 9 13 0.00085 0.082 13.9 1.2 2 20 525 543 525 545 0.93 10 13 0.0022 0.22 12.5 0.2 2 23 551 573 551 573 0.95 11 13 0.00073 0.07 14.1 3.8 1 23 579 602 579 602 0.98 12 13 1e-05 0.00099 19.9 1.3 1 23 608 631 608 631 0.97 13 13 9.7e-06 0.00094 20.0 0.6 1 23 637 659 637 659 0.95
Sequence Information
- Coding Sequence
- ATGATTTCGGTTGATTCTATTTTAACAGATCTGCACGATCTGAGCAAACTAGAAGATCTTTGCAGATTGTGTGGAAAAACTCAACCAACGATTGTTCCTATCTTCGATGAAACTCATCGTTACAATTACTATAAAATTATTCTTCTCCATTTCAAGGATGAACTTCAAGTTTCCAAAGCTGATATATTACCTTTAAAAATGTGCTCGAAGTGTCTTAAATCAATGATGTCGTGGCATGAATTTTACCTCGATTGCTTAAAAGtcgaaaagaaattcaaacgGCTCATGGACAAATTCAGCTTGAACCATGATTCAGAAAAACCGACGTCAACGGTTGGAAATGACGTTGAAGTGATCGAAGTCAGCGTTGATTGTGATAATTTAGATTTCTACAATGAAAACACTAGCGAATTTGATATATCTAACATCAACATCAAAGAATCCTCATCTCTCGTCCATACCGATGATTTTACAGACTTTCATGATGTAGAAGATACGAATGATTCCGATGCCGAGAATAAAACTGCTGAGAAATCTATTAATCATTCCGAACCGGCCGGCGGCGACCAATTTGCATCGTTGCCCATACaacaaaaacctaaaaaaaaaaagtccactGTATGTCGTATCTGCGGTAAACTATACACGAATCGCGGTACATATTTGAACCATTTGCAGAAAGCACATTCCAAAGTGGCCGGCAAGAAACCTCTATCTCAACAACAAATGGACCAAGTCGAAAAAGATAAACAAGAAGAACTGAAGCAACTACGATTGCAATATTTGCaaaagaaaatacgaaaaaaaccaCCGCCTCGGCCGGCCAACTCTGTGCCGGATATTTGCCACAAATGTGGTAAAGCGTTCAAACATTCTAGTAGTCTGAGGAATCATCTGAAATACACCCACGCGGCCGATCCGGAAGCTGTTAAGGCACCTCTGAGAGCGCCCAGAATGTGTGAACTTTGTGGTAAACTATGCAAAGGTAATTACTTCAACAAGCACATGTTAAAGCATACGAATCCTGATGCGTTCACTTGTAAAGACTGTAACAAAGTATTTGCCTACGAATCAACGCTTAAAAGTCATATTAAAGTTTGCCATAACGAAGATAGGCCATTCATTTGTACCATATGTTCAGCTAAATTCAAAAGAGGCGATTACCTTCGAACGCATATACGTTATAAACATCAAGACGTCAAATTAGACGATATGTTTAAATGTGAGAAATGCGATATGATCTACAAAACGAAAAAGTACTACGATATTCACTTAAAAGCCCACGAAGAAGGTAACCTGCAGCCTGTCAAGCGGAAAACCCCTCAAAAAACGCATATTGACGGTATGGTCAAATTCGTTTGTAAAATATGCAATCAATCGTTCAAGAAACGCAATTACCTGCAGCTGCACGAACACTACGTCCACGTCAAAGGACAACCATTCTCGATCAGTGAGAACGCCGAAGGTCAGTACAAATGCGACCAGTGTGATAGAAGATTCTCCTCGATGACCGGACGTAATTATCACTGTAAAACCGTCCACGGTAAAGAGTTCGATATGACTTTCAGTGCCAAATGTGAACATTGCGGATTAACGTTCCGCAACAAAGTTTTTTATGCGAGACATAGAGCTAAATTGAACGGTATGCCTACCTGTTACCTGTGCTGGAAACAGTTCAATTCTGATGAAGAATTGAACAAACATATCGACGTAGATCACTTCACAGATTTGCCATTCGTCTGCGAATTATGTAAATGTAGATTCGTCGCGTTGAAGAATCTCGAACATCACATTAGAACCAGACATTTGAACGATAAACCGTTCAAATGCGATATTTGTGACCATAGGACGACTAGAAAAGATGCTTTAAGGATACATATCCGAGGAACGCATTTAGGAGAGAAACCATACGAGTGTGAAGTCTGTGGGAAACGTTTTTCCCAGAGGAATGACTGGCGGAAGCATGGAGTCAAACATGATAAATAA
- Protein Sequence
- MISVDSILTDLHDLSKLEDLCRLCGKTQPTIVPIFDETHRYNYYKIILLHFKDELQVSKADILPLKMCSKCLKSMMSWHEFYLDCLKVEKKFKRLMDKFSLNHDSEKPTSTVGNDVEVIEVSVDCDNLDFYNENTSEFDISNINIKESSSLVHTDDFTDFHDVEDTNDSDAENKTAEKSINHSEPAGGDQFASLPIQQKPKKKKSTVCRICGKLYTNRGTYLNHLQKAHSKVAGKKPLSQQQMDQVEKDKQEELKQLRLQYLQKKIRKKPPPRPANSVPDICHKCGKAFKHSSSLRNHLKYTHAADPEAVKAPLRAPRMCELCGKLCKGNYFNKHMLKHTNPDAFTCKDCNKVFAYESTLKSHIKVCHNEDRPFICTICSAKFKRGDYLRTHIRYKHQDVKLDDMFKCEKCDMIYKTKKYYDIHLKAHEEGNLQPVKRKTPQKTHIDGMVKFVCKICNQSFKKRNYLQLHEHYVHVKGQPFSISENAEGQYKCDQCDRRFSSMTGRNYHCKTVHGKEFDMTFSAKCEHCGLTFRNKVFYARHRAKLNGMPTCYLCWKQFNSDEELNKHIDVDHFTDLPFVCELCKCRFVALKNLEHHIRTRHLNDKPFKCDICDHRTTRKDALRIHIRGTHLGEKPYECEVCGKRFSQRNDWRKHGVKHDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -