Pvib015642.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000255.1:416972-425632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0038 0.37 11.8 1.8 2 23 66 87 65 87 0.97 2 16 5.1e-06 0.00049 20.9 4.9 1 23 315 338 315 338 0.97 3 16 0.29 28 5.9 0.1 1 23 355 378 355 378 0.93 4 16 5.5 5.3e+02 1.9 0.9 3 11 399 407 398 415 0.83 5 16 0.17 16 6.7 2.6 1 23 442 465 442 465 0.94 6 16 0.021 2 9.5 1.0 1 21 483 503 483 508 0.92 7 16 0.0038 0.37 11.8 2.1 1 23 519 542 519 542 0.98 8 16 0.0011 0.1 13.5 2.9 1 23 557 580 557 580 0.98 9 16 3.1e-05 0.003 18.4 1.1 1 23 588 611 588 611 0.92 10 16 0.16 15 6.8 1.6 1 23 637 659 637 659 0.97 11 16 8.1e-05 0.0078 17.1 1.8 1 23 665 688 665 688 0.97 12 16 0.0015 0.15 13.1 3.5 1 23 694 716 694 716 0.98 13 16 0.00074 0.072 14.1 0.2 1 23 722 744 722 744 0.96 14 16 2.1e-05 0.002 18.9 5.2 1 23 750 772 750 772 0.98 15 16 0.00025 0.024 15.5 3.7 1 23 778 801 778 801 0.97 16 16 0.00024 0.023 15.6 2.3 1 23 807 829 807 829 0.97
Sequence Information
- Coding Sequence
- ATGAGATGTTTAATCGAAAAATGCCAAGAGAGTAGAGCTGCGCTCGAAGGCGAGAAATGGGATCCACTTATATCGCCATCGTGCCAGCCGCTGTCATCGTCGACTACGACCGCCGAAGATCGGgcaaaattagtgaaaagtaaaaaattaggCCCTCTGATGCGTAACTATAAAGGCGACGATGTCGCGGTTCTAGAGTGCGGCCATTGCACGGCGTTCTTTATCGATAGAACCGATTACGAAAAGCATCGCAAGTCGCACGATGAACCGAGCTCCAACGAGCCCGGATGTCCGACCATCGAACACGTCTATGTTTCCGAATACAGTGACGCAGACGAGAATGATGCGATGAAACTCGACCCAGACGCAGTTTCGACTAAAACCAGCAAAAAGAAAGCCTCGAGTACGACTAATTTGAAAGGTTTGAGGACCTCGAGCAGGCAGAAGCTACGGATCAAGGTGGGCGGTAACGTTGTCGTCAAaaaaacagctacaaaattgaGCGGTAGATCTTTATCGTCATCTGCTGACGGATCGAATGTTCCAGCGTCATCATCTCAGCGAAGAAGATCCACAAAAATCGTCAGTTATATGGAACCTAATGATAGCGATGTCGATAAGAAAGGTGCCAAATGTTCTTTCGTCGACGACCAATCCGAAATTCACGTGACCAAAGGTATTGCTGGCAAAGATGCGAAAAAACGTCGATATTCGGTGGTATCCGAGTACGAAGGGCCCAGCTCAGAAGATGAAATCAAGCTGGAGAAAAGCGAAGATATGCATATCGAAGTAATCGAAGAGATATTACCCGATCGTATCATCGCCAAAAAAATATCTCGAGAACGTAAGACTATGTCTGATGGCGAAACAAAGAGTAAAAAACCCAGACTCAAGAGGCTCCGTCGTATCAACGAAGACGATGACGAAAAAGGCCAAACAATCTACACTTGTGCTCACTGTTTGCGTAATTTCCGTCGCAAATCGAATCTCAAAAGGCACATGTCCAAGTTGCACGTAGGTAAGGAGAAAGAAGAAGGCGATTCGTCCAAATGGTTCACTGGGTATTGCTGCGATGTCTGCGGAGAAGGTTTGCAAGTTCGTTCAATGATGATGGCTCATCGCGACGTAATCCACGGTAAATATCCGGAAATAGAGTGGTGTAAATATCAGACTTCTCTGGCCAGGGTTAAATTCTGCAACGAATGCAAGAAGTATTTCCGAGGAGGTAAATTATTCGACGAACACGATTGCGATAAAGGCAAAGGTATCGACGACGAAGACCTGGCCAGATTGCTGAAAGATGCGGAGGATGTTAAACCTTCGTTCTTCTGTTACATTTGTAATCTTTGTTTTAAATGGAAATGGGACTACAGGGCTCATCGTGAAAGCGAGCACAAAGACGCTCCATCCTTAGATTGGACGTCTTTGAGACCTATCAAACTCGAGTTCTTCTGCGATAAATGCTCCAAAGCTTATTCCGACGAGATGACGTTGGATACCCATCAGTGCAGTGCCATTGCTCATCAATCAGCCAACGACGCCGTCGTTAAACCATTCCGTTGCGAACTCTGTGGCAACGACTACTTCTGGAAATCTGATTTCCGACGCCATATGCGAACCAAGCATCCGAAAGAGAACTGCAGACCGACCGAGCACGACACCATTATTTACTCGTGTCCATACTGCGAAGAGAAGTTCTCCATGAAGAAACGTATCCTGCATCACATGCGTAAAGTCCACAACATCAATAGCGATTCGCCTTTTGTCTGTGTGCAATGCAATAAGGTATTCAGAAGACGAGACAATCTCGACAGGCACAACGAATCGTACCATCCGACGCTGAACGATCAGGAAGAAGCGAATAAAATCTTGACCGGTGCTGAGATCAAAATAAACGGCGAGATCGCCTACCATTGCGACGTCTGCAATCGTAACATTTCGAATCCAAACCGGTTCATATCTCATTTTCGAGGCCACTACTCAGAAAACAAGTTCACCTGCGACTTATGCGGCAAACAGGCGAAAACTCAGCATCAGCTTAATACCCACATTAAAAATATTCACCTGAATATTCGCAACTACAAATGCGACATTTGCAGCAAGAGCTTTTACACGAAACAAGCCTGCGAAGAGCACAGACGTATTCACACAGGCGAACGACCATTCTCCTGCGAAATCTGCGGCAAAACGTTCGTCGCCGGCAATGCTTTAATCTCGCACAAACGTTTCCATAACGATTTCTACCCGCACAGCTGCCACATGTGTccgaaaaagttcaaagttcgcAGATCTCTGATTAATCACATTCGAACCCACACTGGCGAACGACCCTTCAAATGCGACCTGTGCACCAAAACGTTCAACAATTCTTCTCAGTATTCGTACCATAAAAAAGTCACTCATTCTGAGGCTCGACCGTTCTCCTGCCCGCTGTGTGGTAATTGCTTCAAAGCGAATAAGTTCCTGACCAGGCATATGGAACTTCATACCGTCCGTAGCCAAATCCAAACCCGAAAATCTAACAATCCAGCTCACTATACAACAGCACAAATAAAACAATCACCTAATACAGCTCAACCGGTTGTTGGTCCTGAATTATCTTCGGTCAGCCATCAACAACACCAACCCCAGCATGTGCCTCAGCAACACCAACCCACCAGGGTTAATCCGGTCGAACAACCGGTTCCCAGTGCGCCCATTATGACTGCGCAGGTCCAACCGGTTCAGCACGTTACCCCCACCACCGTTTACGTTAAAGAGCTAACGCCATCTACGTCGACGAACTACAGAAACGATGATCTGGTCACCGATGCGTTGTACAATTTGCAACGAGGCGGGTACGAGGCGAATGGGAGTGAGTTTGTGAGAACGGCCGCTGCTCCAGACTGTGACATCAACGCCATGGCTTCggttaaacgaaattttagcttgGCTGACGCTTATGCGGCTGCGGCTACTTACGCATTGGGTAACGAAGATTATAAGAATACCTCTAATACGGTCAATAGGCCTTATAATCCTGCCAGCCAGGCTCCTGGTAATCATTCTGTAGCCACGGGAAAACATATGACGTGGTTGTGA
- Protein Sequence
- MRCLIEKCQESRAALEGEKWDPLISPSCQPLSSSTTTAEDRAKLVKSKKLGPLMRNYKGDDVAVLECGHCTAFFIDRTDYEKHRKSHDEPSSNEPGCPTIEHVYVSEYSDADENDAMKLDPDAVSTKTSKKKASSTTNLKGLRTSSRQKLRIKVGGNVVVKKTATKLSGRSLSSSADGSNVPASSSQRRRSTKIVSYMEPNDSDVDKKGAKCSFVDDQSEIHVTKGIAGKDAKKRRYSVVSEYEGPSSEDEIKLEKSEDMHIEVIEEILPDRIIAKKISRERKTMSDGETKSKKPRLKRLRRINEDDDEKGQTIYTCAHCLRNFRRKSNLKRHMSKLHVGKEKEEGDSSKWFTGYCCDVCGEGLQVRSMMMAHRDVIHGKYPEIEWCKYQTSLARVKFCNECKKYFRGGKLFDEHDCDKGKGIDDEDLARLLKDAEDVKPSFFCYICNLCFKWKWDYRAHRESEHKDAPSLDWTSLRPIKLEFFCDKCSKAYSDEMTLDTHQCSAIAHQSANDAVVKPFRCELCGNDYFWKSDFRRHMRTKHPKENCRPTEHDTIIYSCPYCEEKFSMKKRILHHMRKVHNINSDSPFVCVQCNKVFRRRDNLDRHNESYHPTLNDQEEANKILTGAEIKINGEIAYHCDVCNRNISNPNRFISHFRGHYSENKFTCDLCGKQAKTQHQLNTHIKNIHLNIRNYKCDICSKSFYTKQACEEHRRIHTGERPFSCEICGKTFVAGNALISHKRFHNDFYPHSCHMCPKKFKVRRSLINHIRTHTGERPFKCDLCTKTFNNSSQYSYHKKVTHSEARPFSCPLCGNCFKANKFLTRHMELHTVRSQIQTRKSNNPAHYTTAQIKQSPNTAQPVVGPELSSVSHQQHQPQHVPQQHQPTRVNPVEQPVPSAPIMTAQVQPVQHVTPTTVYVKELTPSTSTNYRNDDLVTDALYNLQRGGYEANGSEFVRTAAAPDCDINAMASVKRNFSLADAYAAAATYALGNEDYKNTSNTVNRPYNPASQAPGNHSVATGKHMTWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -