Basic Information

Insect: Pseudococcus viburni
Gene Symbol: -
Assembly: GCA_033439095.1
Location: JAVBJF010000178.1:158548-161893[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.6 4.4e+02 2.1 0.3 11 23 164 176 162 176 0.92

2 10 6.9e-05 0.0066 17.3 0.9 1 23 334 357 334 357 0.94

3 10 0.0067 0.64 11.0 5.1 1 23 364 386 364 386 0.98

4 10 0.011 1 10.4 2.3 2 23 441 463 440 463 0.87

5 10 6.4e-05 0.0061 17.4 3.5 2 23 558 579 557 579 0.97

6 10 7.8e-06 0.00075 20.3 0.4 1 23 585 607 585 607 0.98

7 10 4.9e-07 4.7e-05 24.1 0.8 1 23 613 636 613 636 0.97

8 10 1.8e-07 1.8e-05 25.4 0.7 1 23 642 664 642 664 0.99

9 10 1.2e-05 0.0011 19.7 1.2 1 23 670 692 670 692 0.98

10 10 4.5e-07 4.4e-05 24.2 1.9 1 23 698 720 698 720 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.6	4.4e+02	2.1	0.3	11	23	164	176	162	176	0.92
2	10	6.9e-05	0.0066	17.3	0.9	1	23	334	357	334	357	0.94
3	10	0.0067	0.64	11.0	5.1	1	23	364	386	364	386	0.98
4	10	0.011	1	10.4	2.3	2	23	441	463	440	463	0.87
5	10	6.4e-05	0.0061	17.4	3.5	2	23	558	579	557	579	0.97
6	10	7.8e-06	0.00075	20.3	0.4	1	23	585	607	585	607	0.98
7	10	4.9e-07	4.7e-05	24.1	0.8	1	23	613	636	613	636	0.97
8	10	1.8e-07	1.8e-05	25.4	0.7	1	23	642	664	642	664	0.99
9	10	1.2e-05	0.0011	19.7	1.2	1	23	670	692	670	692	0.98
10	10	4.5e-07	4.4e-05	24.2	1.9	1	23	698	720	698	720	0.97

Sequence Information

Coding Sequence: ATGTCCACCGCTTGCGAACAAAGTATGGATCTTGTTTCGAAGATGGAAATGGTGGATAACCAGTCTGATGTGAATTTGGAAAACTCCGACTCTCAGCACTTATTAGAAACGCAATACCTCAACATACAAAGAGTTTCAGATCTTACAAAAAATCTGGCTGCCGACGCTATTCCTCCTGAATTATTGTCGCATCATGTTGTTGATCTTGGGGCCAATCCCGAGTATTCTCAGCACGTTGTCACGAATACACAATTTTATGAAGGCTCTGACTTCCTTTCTACTAATTTTACCGCCGACGAAGACCGTAGATTAAACGCTGCCTTAATCGCTGTCAAATTTATACATCAAAATATTACAAGCTCTTCATCAAATTCATCTTTAAATGCCGATATATTGCACAACAAACAAACGCTACCTTCGGTTTCTTCAATATCTACTGATAAAGTTATCTCTTCTATTGTTCCGAATTATGTTCAAGCCGTGGAATCTAGAAATCAGTCTGATTTGAGTATGCATATTAATAATCATTCTTCTGTATCCACTGAACAGCATTTAGGTAAAGAATCCGATCAACATAGTAATCAAATCATCAAACTGTATCAGCCTCTATTACAATCGgaAAATAAAACACCTGCTTTACCGCcgctcaaaaaaattagccaTTCGTTACCATCAAGAAGTGCTAAGTACATCGCTGCGGATGATCATACTCACGTCTCCGATGCTGAAACTCTTATAACTAATGCCAGCCTCAATGCTATGCAACGGTCTCAtcaaATACCCGAAACCATGACCGACGTTGTCAAGGCTGAATGCGATGTGTCGTCCGATTTGAATGCATCCTCGGATAATAATGAAATGGGCATTACCGATGATTATGATTCCGAAGTTGATGATACTCGGTCGTCACAAAAAAGCTTGCCTCATAAGAAAAGGATTCCGAATAAACTGAAAAGAGCCTTAACTGCTACACCTACTCGAAACATTCACGCCAAATGTTATAAATGTACCAAGTGTGGAGAACAGTTTCCCAATCAAGCTACATTTAACGCCCATAAATTACAACAGCATTCTTCTAAAAAAACGAACTTTTCTTGCGAATTATGCAACAAAACTTGCACAAATcagcttaaattttttgaacatttgaaaagTCATTACGAACCATCGATGAACGCTGAAAATAACAATAATGATTCATCAGCGAAAGGCGATTATGAACCAGATATAAACACCAACGACCAAGATAAAATGGACGAGCTTCAAGTGAACGAGAGTAACGACGGAAGTTCAGTGTTCAACAGCAGTGAATCAAATCTTACTTGCGGTAAATGCGGACGAGTATTTCGTCGTCAAAAAGCTTTCGATTGTCACATGTCTTTATCGCATCCGAAACAAGAAGATATCGAAGAATTTTCTGAGCCCGAAGATATGATGGAGGGAATTCGGCACGTTGTCAATATGGTACCAGCCGGAGATGAAgaggataaaaatttcgaACCGTGGCAAtcgcccaaaattgaaaatggcgtCATTCATCAAACACCTCAGTCGAGCCAGCCTTCCAGTATTAAAAGTGATACATCGCAAATAATCTCCGTCGAAGTAAAAAGCGAAGAAGGCGATGATTTCGACGACGAACGAAACGCTACTAAAACACGAAAACAATTATCGTGTCCTCATTGCGAGCGAACCTTCATTCATCGCAATTCTCTTCTTTATCACATACGATCCCATACAGGTCATCGACCTCATCAGTGTGAACTTTGTGGAAAGAGTTTCTTCGCTGCGGGTGCGTTGAAGATACACATGAGGCTTCATTCCGGCGACAAACCTTACAAATGTGAATATTGTGGAAGATTTTTCCGTCAATGGGGCGACTTGAAGTACCACATAACTTCGATACATTCAAATACAAAAATGTTCCAATGCGAATATTGTGGAAAAGATTTCGCCAGAAAGTACTCTCTGGTTGTCCATAGACGTATTCATACCGGCGAGAAAAATTACATATGCGAGTTTTGTACCAAAACATTTAGAGCGGCGTCCTATTTACAAAATCATCGACGAATACATACAGGTGAAAAGCCTCACATGTGCGAAGTTTGCGGTAAACCATTCAGAGTACGTTCTGATATGAAAAGGCACATGAAGACCCACGGTGACGTGAGCGTTGTCAGTGTTCTGACGGACTTATCAAACAGCACGTCCGATAATAATTCTCAAGATGTAAGAAATAGTATGTCGTGCCTTGTCGATAATCAAGAAATGAGTGTCATCGATAAACACGAAGAAGTTAGCAGTAATACGATATCGGATCAGGAATCAGATCAAACTTCCAAACCAGTTGTCGCTGCCGTCTCCGAGTCAGTGACGCCACTCAATTTAAACGTCAAACCGGCGCAAACAGCTGAAGATGGCTTATATAATTATACGCGAGAAGAAGACTTAGTCGATAGAGAAAATACCGGAACGTTATACGTTTGGATTCAGACAAATCAAGATGCTATTCTGCCGGATTCATAA
Protein Sequence: MSTACEQSMDLVSKMEMVDNQSDVNLENSDSQHLLETQYLNIQRVSDLTKNLAADAIPPELLSHHVVDLGANPEYSQHVVTNTQFYEGSDFLSTNFTADEDRRLNAALIAVKFIHQNITSSSSNSSLNADILHNKQTLPSVSSISTDKVISSIVPNYVQAVESRNQSDLSMHINNHSSVSTEQHLGKESDQHSNQIIKLYQPLLQSENKTPALPPLKKISHSLPSRSAKYIAADDHTHVSDAETLITNASLNAMQRSHQIPETMTDVVKAECDVSSDLNASSDNNEMGITDDYDSEVDDTRSSQKSLPHKKRIPNKLKRALTATPTRNIHAKCYKCTKCGEQFPNQATFNAHKLQQHSSKKTNFSCELCNKTCTNQLKFFEHLKSHYEPSMNAENNNNDSSAKGDYEPDINTNDQDKMDELQVNESNDGSSVFNSSESNLTCGKCGRVFRRQKAFDCHMSLSHPKQEDIEEFSEPEDMMEGIRHVVNMVPAGDEEDKNFEPWQSPKIENGVIHQTPQSSQPSSIKSDTSQIISVEVKSEEGDDFDDERNATKTRKQLSCPHCERTFIHRNSLLYHIRSHTGHRPHQCELCGKSFFAAGALKIHMRLHSGDKPYKCEYCGRFFRQWGDLKYHITSIHSNTKMFQCEYCGKDFARKYSLVVHRRIHTGEKNYICEFCTKTFRAASYLQNHRRIHTGEKPHMCEVCGKPFRVRSDMKRHMKTHGDVSVVSVLTDLSNSTSDNNSQDVRNSMSCLVDNQEMSVIDKHEEVSSNTISDQESDQTSKPVVAAVSESVTPLNLNVKPAQTAEDGLYNYTREEDLVDRENTGTLYVWIQTNQDAILPDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262793;
90% Identity: iTF_01262793;
80% Identity: -