Pvib006018.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000059.1:1210425-1238728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0083 0.8 10.8 0.8 2 23 195 216 194 216 0.95 2 12 4.1e-05 0.004 18.0 0.1 1 23 222 244 222 244 0.98 3 12 0.00085 0.082 13.9 1.2 1 23 250 272 250 272 0.91 4 12 8.2e-06 0.00079 20.2 2.1 1 23 278 300 278 300 0.98 5 12 2.1e-07 2e-05 25.2 1.0 1 23 306 328 306 328 0.99 6 12 6.1e-05 0.0059 17.5 0.1 1 23 334 356 334 356 0.97 7 12 0.00081 0.078 13.9 0.2 2 23 363 384 362 384 0.95 8 12 2.4e-06 0.00023 21.9 3.2 1 23 391 413 391 414 0.95 9 12 9.6e-05 0.0092 16.8 7.0 1 23 491 513 491 513 0.98 10 12 7e-05 0.0067 17.3 0.6 3 23 521 541 519 541 0.96 11 12 7.5e-07 7.2e-05 23.5 2.9 1 23 547 569 547 569 0.98 12 12 0.13 12 7.0 1.0 1 19 578 596 578 597 0.96
Sequence Information
- Coding Sequence
- atggaaaatgttatcattttgaaaaatttcaattcgctGTGTCGTCTGTGTCTAGTCAGCGGTGTCGAATTAATTAGTATATTCGGCGATTCTACGTTCGGCCTGCGTTACGGAGATGAACCGTTATCTGCGAAAATAACGGCGTGCACTTCGCTCGAGatcTGCGAAAATGACGAATTACCGAATTTTATTTGCAAAACATGTTCTATGAAAATTGTTCGAGCTTTCGAGTTTCGCCAACAAGCTAAAAGATCggatgaaattttacgaagatATGTATTAGATAAGGTGGTTGCCGAAGAACTCGAAGTCGAACCTCTAACATACTGCGTCAAAGTCGAACCGGACGAAGAAGAagatgaaaattccaatttcatgGGTAGCGAAGACTGCAGCGACGAGGGAAACGCCGAACAGAATATCGTCGCTGACGTGGACCCTCCAGCCAACATGGAAGACGAAGACTCGGACGATGATCAAGATCAAATGCAAAATCAGCAAATGCTAGGTCAAGAATTCGAACCAGTTTGGATGAATAACGGAAACgaagaaaacgaaaataatgaaaattctagTCAATGGGTTTGCCAATATTGTAATTCTCATTTTccaaacgaagaaaaatttaatcgacATGCTTTAATACATACTTCgGAACCTCCATTCCCTTGCGATTACTGCGAAGAAAGTTTCGAACTGAGGACAGATTTGAAAGCACATTGGCGAGTGCACAGCGACGGAAATCCTCATATTTGTCAAATGTGCGGAAAATCATTCCCAGATCGAATGTCTTATTTGAAACATTCTGATTTACACGATCAAGTTAAACCATTCCGATGTCCAGTTTGccaaaaatccttctgttacgGATCCGATCTGCGAAAACATGCCATAACACATACAGGGGTACGTCCTTACGTATGCTCAGTATGCGGAAACTCATTCACCAGAAGTACCAGTCTAAATAAACATTTACGAATGCACAACGGAAACAGGCCATTTTCTTGCTCCGCTTGTCCGAAGATATTCGGATCGAGGGGTGACTTGAAACGACACCAAATAATTCATAGCGGAATCAAGCCATGGATCTGTACCGTATGCTCGGTGCCTTTTAACAGAAAAGATAAATTAGTCAGACACGAGAAGCTTCATTCGGGCGAGCCGAGACCATTCCAGTGCTACGAGTGTCCTACGTCATTTAGTCGTAAAGAAGATTTAACGAAACATATTCAATTTCATCATTATAAACCGCCTCCGAATATGGAAACCTCCGCATCCAATAACACAGAAGAGGAAGCCATAGAAAACAGTACATTGGACCAAATAAGCAAATCTGACTTGGAACGAGGTAACCGAACGTTCAGAGCCTTAATCCGAGAAGCTTTCAGTGGTACTCAAACCAACGGCTGGAATCCCACCCTGACTGCGGTAAATATACCAAATACGGTGGAACCTAAACCAGAAAACGTCTTCAAGTGTGACATCTGCCATAAGAAATTTTCCCAGAAACATTCTCTAGattctcataaaaaaattcacaccgcTGTTAAACCCTACGGTTGCTCGATGtgtgaaaaatcattctacAGGAGGCGAGAGCTAACCAGACACGAGGCAGTTCACACCGGTTACAAACCATTTTCCTGCGGCGTCTGCGGAAAATGTTTTTCTCGTACTGATAAGCTGAATCGACACGTGCAGACGCACCAATACAAAAGTGTATTTCGTAATCATAAATGCGAAGCGTGCTCTTTGAATTTTCGCACCGAGCAAGAATTATTGAAGCATAAACCTTTGTGCAAGCCTGAAGTCGTCAATAAAGATAACGAATTTTATCCCGAAGTCATCGTAAATTCGGAAGAAAACGAAGTCCAGTTGGAAAATAAACCTATcgatattaataattttaaaataaccaaaaaagttaAAGAATTAGATTCCAGAGAAACGTTgacaaagttgaataaaaatccggaaattttattattaccaATAAATGCTCCAGATGTCGAGTCGGTTCTCAGTGCTTCCGATGATGGCGACGATGAATATTATTCGGTGGATtacatacttggaaaaaaagtaCGTAAAGGAATTGTTTTTTACCTCATCAAATGGGAGGGCTACGATGAAAGTGAAAGCACCTGGGAACCGATGGAGAACTGCGAATTTGCCATGTCGGCAATTCTCGAGTTTGAAGAAGAGATGTCCGTTAAGACTTGTTCAGAGAAGGATATTGAAATCGTTGGGGTTGAGCCGTCCAAAGATAGAGACGTAAGTGGTATTACCGTCCTCGTAAAGACAGTAGCAGATGCCGATagagttttcaaatttggctCTAAGGAAGTTACTGAAAGGTGGCCTCTCGCATATGTTGATTTCTTACAACAACATATTAAGTTTTGGATGAGGAAGACTTGA
- Protein Sequence
- MENVIILKNFNSLCRLCLVSGVELISIFGDSTFGLRYGDEPLSAKITACTSLEICENDELPNFICKTCSMKIVRAFEFRQQAKRSDEILRRYVLDKVVAEELEVEPLTYCVKVEPDEEEDENSNFMGSEDCSDEGNAEQNIVADVDPPANMEDEDSDDDQDQMQNQQMLGQEFEPVWMNNGNEENENNENSSQWVCQYCNSHFPNEEKFNRHALIHTSEPPFPCDYCEESFELRTDLKAHWRVHSDGNPHICQMCGKSFPDRMSYLKHSDLHDQVKPFRCPVCQKSFCYGSDLRKHAITHTGVRPYVCSVCGNSFTRSTSLNKHLRMHNGNRPFSCSACPKIFGSRGDLKRHQIIHSGIKPWICTVCSVPFNRKDKLVRHEKLHSGEPRPFQCYECPTSFSRKEDLTKHIQFHHYKPPPNMETSASNNTEEEAIENSTLDQISKSDLERGNRTFRALIREAFSGTQTNGWNPTLTAVNIPNTVEPKPENVFKCDICHKKFSQKHSLDSHKKIHTAVKPYGCSMCEKSFYRRRELTRHEAVHTGYKPFSCGVCGKCFSRTDKLNRHVQTHQYKSVFRNHKCEACSLNFRTEQELLKHKPLCKPEVVNKDNEFYPEVIVNSEENEVQLENKPIDINNFKITKKVKELDSRETLTKLNKNPEILLLPINAPDVESVLSASDDGDDEYYSVDYILGKKVRKGIVFYLIKWEGYDESESTWEPMENCEFAMSAILEFEEEMSVKTCSEKDIEIVGVEPSKDRDVSGITVLVKTVADADRVFKFGSKEVTERWPLAYVDFLQQHIKFWMRKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725754;
- 90% Identity
- -
- 80% Identity
- -