Pvib002329.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000016.1:144397-182298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0005 0.048 14.6 0.6 1 21 11 32 11 33 0.96 2 16 0.0021 0.2 12.7 0.6 1 19 41 59 41 61 0.85 3 16 8.8e-05 0.0085 17.0 0.2 2 21 85 105 84 106 0.94 4 16 0.0026 0.25 12.4 0.1 1 21 120 141 120 142 0.93 5 16 0.012 1.2 10.2 0.7 1 16 150 165 150 166 0.89 6 16 0.011 1.1 10.4 0.3 1 21 170 191 170 192 0.94 7 16 0.18 18 6.5 2.7 1 14 200 213 200 214 0.89 8 16 0.00071 0.068 14.1 0.6 1 21 219 240 219 241 0.95 9 16 0.044 4.3 8.5 2.5 1 13 249 261 249 264 0.89 10 16 0.00027 0.026 15.5 1.2 1 19 268 287 268 290 0.94 11 16 0.064 6.1 8.0 0.3 1 11 298 308 298 311 0.87 12 16 0.0001 0.01 16.7 0.3 1 21 312 333 312 334 0.96 13 16 5e-07 4.8e-05 24.0 1.1 1 23 342 365 342 365 0.95 14 16 7.1e-05 0.0069 17.3 2.4 1 23 389 412 389 412 0.94 15 16 0.0044 0.42 11.6 2.0 1 21 436 457 436 458 0.93 16 16 3.4e-06 0.00033 21.4 0.4 1 23 466 489 466 489 0.94
Sequence Information
- Coding Sequence
- ATGCTGAACAGCGAAGATGGTACAACTTATTATGTTTGTCCTAATAACTGCGGTCGGAAATATAAACATTTGGGAAGTGTGAAGAGGCATCTGAAATTGGAGTGTGGTGTCGAGCCACAATTTCAGTGCAGAATCTGCGGCAAGAGATTCAGATACAAGGTGCAAGAAAAGACTCATCTAATCCCGTGCAGCGAATTCAACGGATACGCTGACAATGGAATTACTCTGGAAGGATTCGACGGATATGGTATATCTTGTCCTAAAGGATGTGGAAAAACCTACAAGTACAAGAGCAGCGTTCGTAATCATCTGAGGGAATGCGGAGTCGAACCGCAATTTATTTGTCaatctGGAGTATTTGCTTGTCCTAATGCTTGTGGTCGTGCGTATAAGTACAAAGGAGGACTTCAGCAGCATCTGAGATTCGAATGTGGTCGCGAAAAGCAGTTCAAATGTACCGAATGCCCTAAAGCTTTTCATCGTTTCCATGCATTGAGGGGGTTGCCGTTCGTCTGTCCGAATGCTTGTGGTCGTCAGTATAAGTACAGGAAAGGACTTATGCAACATTTAAAGTACGAATGTGGACGCGAAAAACAGTTTAAATGTACCGAATGCTCTAAGGCGTTCCATCATAGAaAACATTCCATCGAAATGTTTTACTGTCCGAATAAATGCGGTCGCAAGTACAAGTATAGGCAAGGATTGATAGCACACTTGAAATACGAATGTGGTCGCGAAAAACAGTTCAAATGTACCAAATGTGATAAAACCTTCGGTCATAGAAacagaTATGTTGAAATGTTTGTTTGTCCAAATTCTTGTGGTCGTCAGTATAAAAACAAAGGCCATCTTAAGAGGCATTTTATATACGAATGTGGACAAAAAAAGCAATTCGAATGTCCCGGATGTCCCAAAGCATTCCATCAGGTTTCGTTTGTTTGCCCAAATCAATGCGGTCGTCAGTATAAACAAAAAGGGCCTCTTCAAAGACATTTGAGGTACGAGTGTGGTATAGAAAAACAATTCAAGTGCCCCGAATGCTCCAGAGCTTTCAGTCATAAAAGCACATTGAAAACCCATATTGGTGTCGTGcataaaatgattttgaaATATAAAGGAACACTTTGCAGACATTTGAAGTTCGAATGCGGACGCGAGAAACAATTCAAATGTATCCATTGTGGTAAACCTTTCGCCCAAAAATGTAACCTGAAGGCTCATCTTGTTTCTGTTCACGAATCTCTCCCGCAGTTTTTTTACGTCATAACCGGTACGTGTGTTTTTCTAGACCAATCCACCAGAATGTTTATTTGTCCGAATTCTTGCGGTCGCCATTATAAGTACAAAGGTGATCTTCACAGACATTGGAAGTTCGAATGCGGCCgagaaaaacaattcaaatgtTCCGAATGTTCGAAAGCTTTCGGTCGTAGAAGTACTTTGAAGACTCATATTGGTATTGTGCATAAAATGATCTACAGCGACGATctaatttga
- Protein Sequence
- MLNSEDGTTYYVCPNNCGRKYKHLGSVKRHLKLECGVEPQFQCRICGKRFRYKVQEKTHLIPCSEFNGYADNGITLEGFDGYGISCPKGCGKTYKYKSSVRNHLRECGVEPQFICQSGVFACPNACGRAYKYKGGLQQHLRFECGREKQFKCTECPKAFHRFHALRGLPFVCPNACGRQYKYRKGLMQHLKYECGREKQFKCTECSKAFHHRKHSIEMFYCPNKCGRKYKYRQGLIAHLKYECGREKQFKCTKCDKTFGHRNRYVEMFVCPNSCGRQYKNKGHLKRHFIYECGQKKQFECPGCPKAFHQVSFVCPNQCGRQYKQKGPLQRHLRYECGIEKQFKCPECSRAFSHKSTLKTHIGVVHKMILKYKGTLCRHLKFECGREKQFKCIHCGKPFAQKCNLKAHLVSVHESLPQFFYVITGTCVFLDQSTRMFICPNSCGRHYKYKGDLHRHWKFECGREKQFKCSECSKAFGRRSTLKTHIGIVHKMIYSDDLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -